Detail information of GWHGAAEX000702/evm.TU.scaffold_10.79


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|163854545|ref|YP_001628843.1|5.00E-20hypothetical protein Bpet0241 [Bordetella petrii DSM 12804]
nrgi|6606532|gb|AAF19195.1|AF206319_10pectate lyase 1 [Musa acuminata AAA Group]
Swissprottr|Q93Z25|PLY22_ARATH0Probable pectate lyase 22 (Precursor)
trEMBLtr|Q9SDW4|Q9SDW4_MUSAC0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIRAT5G631800Pectin lyase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000641599044162652+
Transcript Sequence

Network for GWHGAAEX000702

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.18Pec_lyase_C1413249.70E-23
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyPL1
Carbohydrate-Active enzymes FamilyPL1

KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.090
SRR2545915Juvenile tuber6.660
SRP108465SRR5643513five period of Gastrodia elata11.540
SRR5643514five period of Gastrodia elata4.660
SRR5643515five period of Gastrodia elata4.400
SRR5643524five period of Gastrodia elata7.380
SRR5643525five period of Gastrodia elata3.580
SRR5643528five period of Gastrodia elata22.100
SRR5643658five period of Gastrodia elata11.490
SRR5643659five period of Gastrodia elata4.670
SRR5643660five period of Gastrodia elata0.280
SRR5643661five period of Gastrodia elata0.530
SRR5643662five period of Gastrodia elata0.080
SRR5643663five period of Gastrodia elata0.210
SRR5643664five period of Gastrodia elata0.150
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.100
SRR6049655Rhizomagastrodiae_C368-T10_good_16.090
SRR6049656Rhizomagastrodiae_C368-T07_good_123.700
SRR6049657Rhizomagastrodiae_C368-T07_good_118.670
SRR6049658Rhizomagastrodiae_C368-T04_good_124.230
SRR6049659Rhizomagastrodiae_C368-T04_good_19.490
SRR6049660Rhizomagastrodiae_C368-T01_good_112.950
SRR6049661Rhizomagastrodiae_C368-T04_good_149.800
SRR6049662Rhizomagastrodiae_C368-T01_good_146.190
SRR6049663Rhizomagastrodiae_C368-T01_good_123.300
SRR6049664Rhizomagastrodiae_C368-T10_good_112.440
SRR6049665Rhizomagastrodiae_C368-T10_good_112.440
SRP279888GastroGastrodia elata tuber 0.14
JuvenJuvenile tuber6.03
Mother_GastroMother tuber of Gastrodia elata 0.13
Mother_JuvenMother tuber of Juvenile 1.46