Gene detail

Detail information of GWHGAAEX000703/evm.TU.scaffold_10.81

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|294508725\|ref\|YP_003572784.1\|	4.00E-12	hypothetical protein SRM_02912 [Salinibacter ruber M8]
KOG	KOG2002	0	TPR-containing nuclear phosphoprotein that regulates K(+) uptake
nr	gi\|720018843\|ref\|XP_010261923.1\|	0	PREDICTED: RNA polymerase-associated protein CTR9 homolog [Nelumbo nucifera]
trEMBL	tr\|D7TCG3\|D7TCG3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27821.3}
TAIR	AT2G06210	0	binding

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000006	4209225	4265703	-

Transcript Sequence
>GWHTAAEX000703 CGCGGGTTGAAAAATATTTTAAAAAGTGACATCAGCCCCCCAAAAAACAAGGCTGCTAATTTACTCGATCAGTAGAGTCGCCCCCGGTGGCCGGAAGTGATTAACGGAAGGCCTTGATTAAGGTCACCGAGGAATATGTCGGCGTGCGTTTACGTACCTGTTCAGAACTCAGAGGAAGAGGTGAGGGTTGCCCTAGACCAGCTTCCACGCGATGCCTCGGACATCGTGGACATCCTCAAGGCGGAGCAAGCCCCACTTGATCTCTGGCTCATCATTGCGCGGGAATACTTCAAGCAAGGAAAAATTGATCAGTTCCGACAAATTTTGGAGGAAGGGTCCAGTCCTGAAATAGATGAATACTATGCTGATGTTCGGTATGAACGGATTGCCATCCTGAATGCTCTTGGTGCTTACCATACCTACTTGGGAAAGGTTGAGACAAAACAGCGGGAGAAGGATGAAAATTTTGTTTTAGCAACTCAATATTACAATCGAGCATCAAGGATTGATGTTCACGAGCCTTCAACTTGGATTGGGAAAGGTCAGCTTTGTGTGGCCAAAGGTGATATCGTACAGGCATCTAGCCACTTCAATATTGCCTTGAATGAAGACCAGAATAATGTTCCTGCGCTTCTTGGTCAGGCCTGTGTTGAGTTCAACATGGGGGAAAATGAAGATCAGTATCAGAAAGCAGTCGAGTCATATAAGAAATCCTTGGACTATTATAAGAGGGCACTGCGAGCTTACCCTAATTGTCCTGGAGCTTCAAGGCTTGGTATTGGCTATTGTAGATACAGGCTTGGTCAATTTGAAAAGGCCCGACAGGCCTTTCAACGGGTTCTTGATTTGGATCCTGAAAATGTGGAGGCTCTTGTGGCTCTTGGAATTATGGAACTTCAAACAAATGAAGTTAGTGGTATTCAAAATGGCATGGCGAAGATGCAGCAAGCTTTTGAGATATATCCATATAGTTCGATGGCCCTAAATCATTTAGCGAATCATTTTTTCTTTACTGGTCAGCATTTTCTAGTCGAACAGTTAACCGAGACGGCTCTTTCTGTAAGCAATCACGGATTGATGAAGTCTCATTCCTATTACAACTTAGCAAGATCATATCACAGCAAGGGTGATTTTGAAAAGGCTGGAAGGTATTACATGGCTTCTGTCAAAGAAATTAACAAGCCTCAAGAATTTGCTTTGCCATTTTATGGTCTAGGACAAGTTCAGTTAAAATTAGGAGATTTGAAAAATGCTCTTTCAAACTTTGAGAAAGTTCTTGAAGTTTACCCTGAAAATTGTGAAACTTTAAAGGCTATCGGGCATATTCATGTTCAGCTTAGTCAAACTGAAAAGGCCATAGACATATTTCGGAAAGCTACCCGTTCTGATTTGAAGGATGCTCAGGCTTTTATAGAACTTGGCGAATTATTGATGCCGGCAGATCCTGGAGCTGCTTTGGATGCCCTAAAATCTGCCTTAAATATTCTCAAAAGGGGAAGTGAAGACGTACCTGTAGAGTTGCTCAATAATATTGGAGTTCTGTACTTCGAAAAGGGAGAGTTTGAGTTAGCTGAGCAAGCTTTCCAGGAGGCTCTTGGAGAAGTGGTCAACCTGCCTTCTCTTTTTGAAAGAGCAAAGAATTATACTTTGCATAGCAATGCATACAATGAACAGTGTTGGATTATGACGATATTCCACCAACTTGAAGAAGATAGCATTTTGCTAGAACTTCACTGGGATAAAGTTACTACTCTTTTCAACTATGCCAGACTCCTTGAGCAGCAGCACAACTACGAAAGAGCAAGTATATTATACCGGCTGATTTTGTTTAAGTATCCAGATTACATTGATGCGTATTTAAGGCTTGCAGCAATGGCTAAAGAAAGGAAGAATATCCAACTTAGCATTCAAATGATTCATGAAGCTCTTAAAATAGATGGCAAGTGTCCCAATGCTCTGACAATGCTTGGTGACCTTGAACTAAGAAGTGATGACTGGGTTAAGGCCAAAGAAACTTTTCGTGCTGCAAGAGATGCAACTAATGGAAAAGATTCTTATGCCACTCTCTCCCTGGGTAATTGGAACTATTTTGCAGCTATGCGATCTGATAAAAGAGGCTCTAAATTGGAAGCAACTCATCTTGAAAAGGCAAAGGAACTCTATACAAAGGTTTTGGTGCTGCGTCCTGCAAATCTCTATGCGGCCAATGGTGCTGGAGTGATTTTAGCTGAGAAAGGTCATTTTGATGTTTCAAAGGATGTTTTCACACAGGTACAAGAGGCTGCATCTGGAAACATATTTGTTCAGATGGCAGATGTGTGGATAAATCTGGCTCATGTCTACTTTGCTCAAGGTCATTTTGCCTTGGCTGTGAAGATGTATCAGAATTGCTTGAGGAAGTTCTATTATAATACAGATTCGCAAGTACTTCTATATTTGGCTCGAACTCATTATGAGGCTGAACAATGGCAAGAGTGCAAGAGAGCTTTGCTTAGGGCTGTCCATTTGGCACCGTCAAATTATACTCTACGGTTTAATGCAGGAGTTGCAATGCAAAAGTTTTCAGCATCAACTCTACAAAAAACAAAGAAAACTGCAGATGAGGTTCGTACTACAGTCACTGAATTGAAGAATGCAGTTCGTGTGTTCAGCCAACTTTCTGCAGCTTCTAGCATCCATTCTCATGGATTTGATGAGAAGAAGATACGGACTCATGTGGAATATTGCAAATTTTTGCTTAATTCAGCTAGGGAACATTGTGATCAAGCTGCACTTGAAGAACAGCAGAATCTACAGAGGCTAGAAGTTGCTCGTCAGGTATCCTTAGCAGAGGAAGCTCGACGGAAAGCTGATGAACAGATGAAATATCAGTTGGAACGGAGAAGGCAAGAGGACGAGCTGAAAAGAGTAATGCAACAGGAAGAAAATTTTGAGCGTATAAAGGAGCAATGGAAAAATTACAGCAACACTCCTGGTGGCAAGCGCAAAGATAGGACACCGCTTGAAGGCGAGGATGGCGAAAACAGCGAGAGGAGGAGGAGGAAAGGCGGGAAAAGACGAAGGAAGGATAAGAGGCAGGATCAGCATGAGCACGATGCCAACGCGGAGAACGAGCAGGATGACGTTGACGAAGAAGAGGAGGCAAGGCAAACGAGCGGTCACAACGAAGAGGCAGATAGAACGCATGACCATCTGGCCACAGCTGGTCTCGAAGATTCTGACGTCGAAGATGATGCGGGAGACTATGCGATTAGCAGGAAGAGAAAGGCGTGGTCAGAATCGGATGAAGAAGCGGCGTATAGGGAGCGCGATCCCACCCCTGTTGGATACAGGAACTCTCCTGGAAGTGACGACGACGGCAGAGGCAGTATGAACGAAGAAGACGAGCATTCCTGAGCGCCGGCCAGTTTTTTTATTTTTTATTATTATTGTTATTTTGACTCTTTGGGTCCTAAATTAAGATTTTGAGTATATATGTATTTGCATTTCTTGCACGCAAACTTTTATTTTTTACAAAATCACCACCTTGACTTAAAACCCTTGGTTGAAAGTTTGTCTATTAAACTATGGTGGCGCGTAATAGTAGGGGGGACCTTTGTAAATATGAGATTTTCGGTGCTAACCACCACCCCGATAGGAAGTTCTTTTTTTATTTATTTATGAAAATCCGTAATAGAATAATTGTATATTTTTAAGTGCTATTTTTT

Network for GWHGAAEX000703

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07719.16	TPR_2	215	242	3.10E-06
PF13181.5	TPR_8	318	345	0.00029
PF13181.5	TPR_8	358	387	0.0038
PF13176.5	TPR_7	390	421	0.0033
PF13432.5	TPR_16	442	489	0.0015
PF13181.5	TPR_8	726	753	0.0083

Protein Sequence

>GWHPAAEX000703
MSACVYVPVQNSEEEVRVALDQLPRDASDIVDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDEYYADVRYERIAILNALGAYHTYLGKVETKQREKDENFVLATQYYNRASRIDVHEPSTWIGKGQLCVAKGDIVQASSHFNIALNEDQNNVPALLGQACVEFNMGENEDQYQKAVESYKKSLDYYKRALRAYPNCPGASRLGIGYCRYRLGQFEKARQAFQRVLDLDPENVEALVALGIMELQTNEVSGIQNGMAKMQQAFEIYPYSSMALNHLANHFFFTGQHFLVEQLTETALSVSNHGLMKSHSYYNLARSYHSKGDFEKAGRYYMASVKEINKPQEFALPFYGLGQVQLKLGDLKNALSNFEKVLEVYPENCETLKAIGHIHVQLSQTEKAIDIFRKATRSDLKDAQAFIELGELLMPADPGAALDALKSALNILKRGSEDVPVELLNNIGVLYFEKGEFELAEQAFQEALGEVVNLPSLFERAKNYTLHSNAYNEQCWIMTIFHQLEEDSILLELHWDKVTTLFNYARLLEQQHNYERASILYRLILFKYPDYIDAYLRLAAMAKERKNIQLSIQMIHEALKIDGKCPNALTMLGDLELRSDDWVKAKETFRAARDATNGKDSYATLSLGNWNYFAAMRSDKRGSKLEATHLEKAKELYTKVLVLRPANLYAANGAGVILAEKGHFDVSKDVFTQVQEAASGNIFVQMADVWINLAHVYFAQGHFALAVKMYQNCLRKFYYNTDSQVLLYLARTHYEAEQWQECKRALLRAVHLAPSNYTLRFNAGVAMQKFSASTLQKTKKTADEVRTTVTELKNAVRVFSQLSAASSIHSHGFDEKKIRTHVEYCKFLLNSAREHCDQAALEEQQNLQRLEVARQVSLAEEARRKADEQMKYQLERRRQEDELKRVMQQEENFERIKEQWKNYSNTPGGKRKDRTPLEGEDGENSERRRRKGGKRRRKDKRQDQHEHDANAENEQDDVDEEEEARQTSGHNEEADRTHDHLATAGLEDSDVEDDAGDYAISRKRKAWSESDEEAAYRERDPTPVGYRNSPGSDDDGRGSMNEEDEHS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.330
SRP064423	SRR2545915	Juvenile tuber	49.520
SRP108465	SRR5643513	five period of Gastrodia elata	27.510
	SRR5643514	five period of Gastrodia elata	28.060
	SRR5643515	five period of Gastrodia elata	23.690
	SRR5643524	five period of Gastrodia elata	24.660
	SRR5643525	five period of Gastrodia elata	17.560
	SRR5643528	five period of Gastrodia elata	13.440
	SRR5643658	five period of Gastrodia elata	18.130
	SRR5643659	five period of Gastrodia elata	30.090
	SRR5643660	five period of Gastrodia elata	31.580
	SRR5643661	five period of Gastrodia elata	26.670
	SRR5643662	five period of Gastrodia elata	25.540
	SRR5643663	five period of Gastrodia elata	29.320
	SRR5643664	five period of Gastrodia elata	30.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.620
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	40.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.260
SRP279888	Gastro	Gastrodia elata tuber	35.01
	Juven	Juvenile tuber	44.03
	Mother_Gastro	Mother tuber of Gastrodia elata	30.19
	Mother_Juven	Mother tuber of Juvenile	35.69