Gene detail

Detail information of GWHGAAEX000709/evm.TU.scaffold_10.96

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3142	5.00E-06	Prenylated rab acceptor 1
nr	gi\|743849998\|ref\|XP_010939766.1\|	2.20E-09	PREDICTED: uncharacterized protein At4g29660 [Elaeis guineensis]
Swissprot	tr\|Q94K18\|Y4966_ARATH	3.00E-07	Uncharacterized protein At4g29660
trEMBL	tr\|A0A068U6F7\|A0A068U6F7_COFCA	1.00E-07	Coffea canephora
TAIR	AT4G29660	5.00E-06	embryo defective 2752

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000006	4883913	4899898	-

Transcript Sequence
>GWHTAAEX000709 ATAATTTTGTGTTTACTGTAATTGTTTCTCGCTGCCGTTATTTCTCGGTGAAACAGTTTTCACTGCAGTGTCTGAATCGGGGCATGAGTGGGGGCATGCAATATTTCACAACATTGAAGTCCTCTCAACTACCTTGCGCCTCTTCCATTAGATTTATATGATTACTTGTTTGGCACATTGTTTTTAGCAAGAGGACTCTTGTGTATAAACTGAGGAGAATAACCACTCTTTTGGGTTTTGCGAGGAGCTTTAAGATGCAGTATTTGGGGGTTACTGTGATTGGCAAACCCTTGAGGAGAATGGATTCTCGGGCAGTGGCGGAGAAGATGCGTTTCAGAATCGGCTCTTGTAGCAATCGTTTCTTGTCACTTACAAGACGTTTTTGCCTGATCCGGTCCGTTATCTTCATCATCCTAGTTTACGTCATGATGGTATCGACCATCACAGATTTCTGCTTGCTGGAGATTGAGGCCGCCATCCGAAAGTTGTAGGATGGAACTGAGGGTTGTGGCATGCACTCCGTGAAATGGAAAGAGGTTTGTTGTCCTCTCTCTGATGGTGGTCTAGGGGTCTTGGACGTCAGGATGTGGTGGTGGATTCTTGTGGTTTGCCACACTCCTAGCTTCATGGGCAGGGATGATTTCTTGTTGGTACGTGCGATAGAGGCACAATATCGATCCTGCAGGCAAGCTTTCATGGTGCGACGGAACTACTCTGCAGTTGGCAGATGACCTGTAAGGGCTGGTAGATTGTTTGGAGGCACACTACATTGTGGATTGGTAGTGAGATTCAGATTTGCACCTTGGATGATGATTGGATTGGGCTGGGCGACTTTCAACACCCGTTGATCTTGGGTGATGATGGTTATTGGGATACAGTTAGACTCCACACCTTTGAAGATAGCGTCTTCAACCACATCCTCTCAGCATGTTCTGATCCACCACTATGAGCAGGATGAGGTCCAGCAACATTTCCATAGTTTTTTTGAGAGTACATCGTGTAAGATCTACCAACTAGAGGAAAACAGGGATGAGTGACCTTTCCACCGTATTTGGGAGCTCCACCTCTTAAGGTTTCTGAGAGATATGCTATCCCCACGAACTTGTGGTTGGGGGATTTCTACCTCAACCACTTGTGAGGGAGCATTTTGTTACTAGTTGTATTTACACGGGAGCCATTCAAAAGGCCCTTGTTAGGTGGAGAGTCATGGACTCTGCCTTACAGATTAGGAACAACTTGTCTCATTATAAATTGTACCTTCAGCAGGAGACATAGGCTTACTGGGTGGATCTTGGGGTACACCCTCTATTAGTCTTAGCGGATTAGGCTAGCGAAGAATCATGGATGTCTCTTCCCCATAGAAGAATCATGAATGCCTCTTCCCCATTTCGACGATTTGTGCTTGCTCTATACTTGTGGTAATAATTGGTACTAACCTCTGCAATGAGATGGATACATGGGGCACCTCAGCTTTAATTGATTCTTTCACCTCACTCCACAAATGGTGCTCCCATCCACTTATTGGCTTAAGGTAAACATCGAAAATTCTTTTTGCTACTGGGATCACGACTCCTTTGGCGGTCTCATCATCCGGGATGTGAGGCGAGTTGGTGGCCGCCTGCGGGGTCCGACTTCAGGTTTAGACTCTCGAGGAGGCTGAGATATAGGTAATCTTTCTTTAGAGGGCGTTCTTGGAGTGGATCGGGAAATGGGCGATATTGTCATCGTGCGTGACTGTCTAACCACCCTGAGACGGACCCGACGAGCTTGGGAGCATTCTAAGAGGACTTGTGGCTACCTGGCATGATGACTAGCTCCCTTATTGTTATTCTAGTCTTGTTTGTACACTGCAAGCTTGAGTTTATCCATGCAGTGAACTTTTGTGTTTTTTTTTGTCTGCCAGGGCAATTTTTAGTTTTTTGAGGGGGATGGGCTTCTTGATAAGACTTTCAGACCTTCTCAAAGATGGGTACTGGTCCTAGATGATGATTTTTGAATATATATAAAAACTATCATCTATGATCAAACCCCACAATTTCATCCTGGAGGATGACAGAATAACAATATGAAATTTGGCGATGGTTTTGTTCATAGCTGTCTACTTGGGGGGAAATTTAGTTCGAATGATATGGAGATAAAAGGGATATCAAAGGAGGGCGGCAGTTGCCCATTTAGCTTGCTATTGAAGTGGCATGCCTAGAGCTTATAATGCAAAACATCATCTAATTTGCATTTATATTGAGTTTTTAATCAGTTTACTGCATTTCAAGGGACACTAAGGACTGCAACGCATCATCAGTTCAAGATGATCCGACACAGGAATATTTATATCTTATGGAGCACTAACATATTTAGCGTTTTCCTTCTTTCGGCAACCACTTTTATGTATCATAGTTGAATGTTTAACTATTTTTATTCCCTGTAAGTTTCATTTTTTTCTCAGCGCCATGTTAATGAGGGTGTGCAATAGGTGTGATGCATTTTATTACAGCTGGGATTACTTTTTTCAAAAAATTGTCTTTTTTTTCGTAACCATAGAATTTAACTGAACAATAGGAAGAACATTAAAAACCCTCATGAGTTTTGAGCAATGCATTATAAGCTATAATTCAAAAACCGACCAACTCTCATTAGCTGAGAGTGGGACCATACACAATTTCTTATAAAAAGTATGAAAATTACATCCATAATGTTTGAAACTTGTATTTACTGAATTATCACCCCTTCCTCAAAAAATGAACTAATGATTGGGCGTATTTATGCTTGCTACGATCAAATCGTTGTATTTTACAACTGTGAAATATACGGGCTAAGATTTTCTTGTATTTTTTGAAATTAGGATGGTTTTATTAAAAATGATGGTAATATGGTGGTAATCTCGTAAATATGCAAATTTTTAGGGCATAATATGTCAAGATTCCAAAAAAAGGTACCCTGGTCCACTGTCACAGCCAATGAGAGTAGGCGGACTTTAACGGGTTTTCTTAGAGCTGGGCTTAAAAATCATTTTCCAATTGCTAATAAACTCATTTGTACTGATGACATATTTAAAATGTTTTCTATTTCTTGTGACATTGATCCAGCTTCGTAAGCACTTCCTTGAGCCGTTTTTTTCATTCAAAGAGGAGAATCATCACGAATAACTCTTATTTCTTGAATACAGCAAGATGACAAGTCGATTTTGGAGGTGTTATGCAGATTATCTCTTTTACAAGGTTATTTATGTTTCTGCATTCTATACTGGTGTTATTGGATCGGCAATTACTGAACAGCTCTATAAGGTTGAAGAGATAGAAGCCCTGACAAATGTTGTCCTTGGCCTTTTGAGTGAGAGGCTAGTTTATCAGTCCAGGGTGCGCCCCACCCATCACATTCAACAGCAGTTGACGGGTGAGAGCGACCAGTGCGGGACCCACAGCAGGCACTCAGCGGAAGCCATGTGGAATGCGCAGATGGCGGGACTTGGTTTGAAGCGCAGGATCAAGGCTAGACCGTTCCGATCAGGATAG

Network for GWHGAAEX000709

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.050
SRP064423	SRR2545915	Juvenile tuber	6.920
SRP108465	SRR5643513	five period of Gastrodia elata	5.690
	SRR5643514	five period of Gastrodia elata	6.600
	SRR5643515	five period of Gastrodia elata	4.970
	SRR5643524	five period of Gastrodia elata	5.850
	SRR5643525	five period of Gastrodia elata	4.830
	SRR5643528	five period of Gastrodia elata	6.330
	SRR5643658	five period of Gastrodia elata	7.950
	SRR5643659	five period of Gastrodia elata	4.210
	SRR5643660	five period of Gastrodia elata	5.390
	SRR5643661	five period of Gastrodia elata	3.700
	SRR5643662	five period of Gastrodia elata	3.040
	SRR5643663	five period of Gastrodia elata	4.230
	SRR5643664	five period of Gastrodia elata	2.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.160
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.970
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.570
SRP279888	Gastro	Gastrodia elata tuber	3.82
	Juven	Juvenile tuber	8.62
	Mother_Gastro	Mother tuber of Gastrodia elata	1.55
	Mother_Juven	Mother tuber of Juvenile	2.49