Detail information of GWHGAAEX000713/evm.TU.scaffold_10.101
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|148658115|ref|YP_001278320.1| | 5.00E-27 | NB-ARC domain-containing protein [Roseiflexus sp. RS-1] |
| KOG | KOG4155 | 2.00E-104 | FOG: WD40 repeat |
| nr | gi|695056765|ref|XP_009416619.1| | 1.29E-136 | PREDICTED: notchless protein homolog 1-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6S7B0|TAF5_ARATH | 4.00E-14 | Transcription initiation factor TFIID subunit 5 |
| trEMBL | tr|M0TYC0|M0TYC0_MUSAM | 5.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P07610_001} |
| TAIR | AT1G24530 | 2.00E-104 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000006 | 5289001 | 5290483 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000713
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 111 | 132 | 0.042 |
| PF00400.31 | WD40 | 213 | 244 | 0.00061 |
| PF00400.31 | WD40 | 255 | 289 | 0.00041 |
| PF00400.31 | WD40 | 301 | 333 | 0.0066 |
| PF00400.31 | WD40 | 343 | 387 | 0.14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.480 |
| SRR2545915 | Juvenile tuber | 10.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 20.050 |
| SRR5643514 | five period of Gastrodia elata | 9.380 | |
| SRR5643515 | five period of Gastrodia elata | 11.650 | |
| SRR5643524 | five period of Gastrodia elata | 11.140 | |
| SRR5643525 | five period of Gastrodia elata | 21.300 | |
| SRR5643528 | five period of Gastrodia elata | 11.610 | |
| SRR5643658 | five period of Gastrodia elata | 8.990 | |
| SRR5643659 | five period of Gastrodia elata | 18.670 | |
| SRR5643660 | five period of Gastrodia elata | 12.220 | |
| SRR5643661 | five period of Gastrodia elata | 10.020 | |
| SRR5643662 | five period of Gastrodia elata | 46.920 | |
| SRR5643663 | five period of Gastrodia elata | 34.910 | |
| SRR5643664 | five period of Gastrodia elata | 60.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.97 |
| Juven | Juvenile tuber | 42.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 74.92 | |
| Mother_Juven | Mother tuber of Juvenile | 93.74 |