Gene detail

Detail information of GWHGAAEX000723/evm.TU.scaffold_10.115

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2180	Late Golgi protein sorting complex, subunit Vps53
nr	gi\|672139513\|ref\|XP_008793539.1\|	PREDICTED: vacuolar protein sorting-associated protein 53 A [Phoenix dactylifera]
Swissprot	tr\|Q0WQF4\|VP53A_ARATH	Vacuolar protein sorting-associated protein 53 A
trEMBL	tr\|M0U3M0\|M0U3M0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P26130_001}
TAIR	AT1G50500	Membrane trafficking VPS53 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000006	6419048	6528039	+

Transcript Sequence
>GWHTAAEX000723 ATGTTGCATTGCGGAATCTATTACTTCGCTCGACCCTGGAGATCTCGACGCCGAGCTCGCCGAGATTGCTTCCGCCATCGCTGCCGTACGCGTTCGCCTTGCTTCGTCCGCCATCGCTGCCAGACGCACGCAAAGTCGCAGAGGTCGCCCGACTCCCTCTCGCCTCTCGCGCAAGCAGCAGCCGATCAGGTTATTTTTTATTTGGATTGGAAATTGTTTGTAAAGAGCAGCCTACGTAAAATGGACAAGTCCAGTGCCTTGGAATATATCAACCAGATGTTTCCTACTGAAGCATCATTATCTGGAGTAGAACCACTTATGCAGCAAATACAGGGTGAGATTCGTCTTGTGGATGCTAGTATATTGGCTGCTGTTCGTCAACAGAGTAACTCTGGGACAAAAGCCAAAGAGGATCTTGCTGCAGCAACAAATGCAGTTCAGGAATTGATGCACAAAATTTTTGAAATTAAGACAAAGGCTGAACAAAGCGAAGCGATGGTTCAAGAAATCTGCCGGGACATAAAAAAACTAGACTTTGCAAAGAGGCATATAACAACTACAATCACTGCTCTTCATCGTCTTACTATGCTCGTTTCAGCAGTTGAGCAACTTCAATTAATGGCCTCAAAACGCCAGTATAAGGAGGCTGCTGCACAACTGGAGGCAGTGAATCAGCTGTGCAGTCATTTTGAAGCCTATAGAGATGTGCCAAAAATAGCAGAGCTTCGAGAGAAGTTCAGGAACATAAAAAAAATTCTTAAATCTCACGTGTTTTCAGATTTTTCAAGCTTAGGAACTGGAAAAGAGACTGAAGAAACAAATTTACTGCAGCAGCTAACAGATGCTTGCTTGGTGGTTGATGCATTAGAACCATCGGTTAGGGAAGATCTGGTAAAAAATTTTTGCAACAAGGAACTGACTTCATACAGACAGATTTTTGAGGGCGCAGAACTCGCAAAGTTGGATAAAACTGAAAGGAGATATGCATGGATTAAGAGGAGATTAAGAACAAATGAGGATATTTGGAATATTTTCCCAACTTCTTGGCATGTTGACTATCTGCTATGCATTCAATTCTGCAAGCTTACAAGAGTGCAACTAGTGGGTATTCTGACTAATCTCAAAGAAAAACCAGATGTTGGAACATTACTTTTGGCACTACAGAGGACACTTGAGTTCGAGGAAGAGTTAGCTGAAAAATTTGGAGGAAATACAAACTCTCGAGATAGAGAATTTGGAAGTGATGAAGAAGTGAATGATGTTAAGAATAAAAACCAAGCTGTCTCAGATATCAGAAAGAAGTATGAAAAAAAACTCGCTATACCTCATGGAGGTGAAATAAAACCAAAGGACATGAATAAGGACTCAGTGGTGCCTGGTTCTGGGCTTAATTTTCATGGTATCATTTCATCATGTTTTGAACCGCATTTAACTGTCTATGTGGAACTTGAGGAGAAAACCCTTATGGAGAATTTGGAGAAACTTGTTCAGGAAGAAACTTGGGAAACAGAGGAGGGTAGCCAGACAAATATTCTATCAAGTAGCATGCAGATATTCTTGATAATAAGAAGAAGCTTAAAGAGGTGCAGTGTATTGACCAAGAGTCAAACATTATTTATCTTGTTTGAGGTATTTCAAAAAATTCTTAAAGCATATGCAACAAAATTATATGCTAGACTACCAAAAGGTGGGATTGGTATTGTTGCAGCTGCCACTGGCATGGATGTGCAGTTAAAGATGTCTGACAGAGATGAGAGAATGATTTGCTATATCGTCAATACTGCGGAATACTGCAACAAAACTTCTGGCGAGCTGGCAGAAAATGTTTCGAAGCTGATTGATACTCCATTTGCAGACAAGGTGGAAATGTCTGAAGTTCAGGATGAATTTTCAGCGGTTATCACAAAATCTTTACTCACACTAGTTCAAGGTATTGAAACAAAGTTTGATACTGAGATGATTGCAATGACACGTGTTCCATGGGCTAGTCTTGAAAGTGTTGGCGACCAATCAGAGTATGTCAATGGCATAAATTCCATTCTTACTAGCAGTATTCCTACACTTGGAAGCCTTCTTTCTCCTATATATTTCCAGTTTTTCTTGGATAAGTTGGGAGCTTCTCTTGGACCTCGATTTTACCTCAACATTTACAAATGCAGACACATATCTGAAACTGGTGCGCAGCAGATGCTGCTCGACACTCAGGCCGTCAAAACAATCCTTCTGGACATTCCTGCATTAGGAAAACAGCCGGCCAATGCTGCTGCGTATTCAAAATTCGTAAGCCGGGAAATGAGCAAAGCGGAGGCGCTCTTGAAGGTCATACTGTCTCCTGTGGACTCCGTGGCCAACACTTACCGAGCGTTGCTTCCGGAGGGCACGCCCTCGGAGTTCCAGAGAATACTGGAGCTCAAGGGCTTAAAGAAGGGTGATCAGCAGAGCATCATGGATGATTTCAGCAGGCACGGCGCAGGCGTCAACCACCCTGCCGTTGCTCCGTCGGTGATTCTGCCGTCTCAGCCACCGAATGTCGCCGTTACGCAGAGCCCAATCGCGACTGCGGTGACGTCACGAGAAGACGTGCTGACGCGGGCCGCTGCGCTCGGCCGAGGAGCGGCCACCACTGGTTTCAAGAGGTTCCTTGCCCTCACCGAGGCTGCCAAAGACCGCAAGGACGGCCCTTTCAGAAAGCTCTTCAGCCCCTGATCATTCTTACACATTTTTTTTTTAAACTAAAAAAAATTGGTAAAAATTAGTTTTGATGATATTTTAGTATTTATATATGTAAAATTAGAATTGATGGGATATATTTTGGTTATGGGTCATGCTGAGTAATTTTTCCTATCAAATGAATAAATTATAGTCCTATGAAAAATATTTTTTCTTCAAAGAAAATAAGTTTTAAATAATATGTAAATATTGTAGAGGTT

Network for GWHGAAEX000723

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04100.11	Vps53_N	82	500	9.80E-149

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.050
SRP064423	SRR2545915	Juvenile tuber	36.320
SRP108465	SRR5643513	five period of Gastrodia elata	32.010
	SRR5643514	five period of Gastrodia elata	33.720
	SRR5643515	five period of Gastrodia elata	33.230
	SRR5643524	five period of Gastrodia elata	35.560
	SRR5643525	five period of Gastrodia elata	24.910
	SRR5643528	five period of Gastrodia elata	28.430
	SRR5643658	five period of Gastrodia elata	31.500
	SRR5643659	five period of Gastrodia elata	35.110
	SRR5643660	five period of Gastrodia elata	38.040
	SRR5643661	five period of Gastrodia elata	35.980
	SRR5643662	five period of Gastrodia elata	36.840
	SRR5643663	five period of Gastrodia elata	41.840
	SRR5643664	five period of Gastrodia elata	38.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.070
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	31.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.230
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	31.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	25.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	31.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	31.630
SRP279888	Gastro	Gastrodia elata tuber	39.43
	Juven	Juvenile tuber	45.51
	Mother_Gastro	Mother tuber of Gastrodia elata	31.03
	Mother_Juven	Mother tuber of Juvenile	37.65