Detail information of GWHGAAEX000725/evm.TU.scaffold_10.121


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16091.00E-81Protein involved in mRNA turnover and stability
nrgi|743803482|ref|XP_010926931.1|8.01E-159PREDICTED: uncharacterized protein LOC105049083 [Elaeis guineensis]
trEMBLtr|M0SUI3|M0SUI3_MUSAM3.00E-143Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P00540_001}
TAIRAT5G031801.00E-81RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000667967826837863-
Transcript Sequence

Network for GWHGAAEX000725

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.6RINGv2613071.30E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms22.860
SRR2545915Juvenile tuber15.120
SRP108465SRR5643513five period of Gastrodia elata14.930
SRR5643514five period of Gastrodia elata15.570
SRR5643515five period of Gastrodia elata13.710
SRR5643524five period of Gastrodia elata13.120
SRR5643525five period of Gastrodia elata11.920
SRR5643528five period of Gastrodia elata12.290
SRR5643658five period of Gastrodia elata14.390
SRR5643659five period of Gastrodia elata10.410
SRR5643660five period of Gastrodia elata10.480
SRR5643661five period of Gastrodia elata9.970
SRR5643662five period of Gastrodia elata8.420
SRR5643663five period of Gastrodia elata10.640
SRR5643664five period of Gastrodia elata9.610
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.640
SRR6049655Rhizomagastrodiae_C368-T10_good_126.010
SRR6049656Rhizomagastrodiae_C368-T07_good_118.820
SRR6049657Rhizomagastrodiae_C368-T07_good_117.680
SRR6049658Rhizomagastrodiae_C368-T04_good_119.850
SRR6049659Rhizomagastrodiae_C368-T04_good_118.060
SRR6049660Rhizomagastrodiae_C368-T01_good_115.910
SRR6049661Rhizomagastrodiae_C368-T04_good_115.440
SRR6049662Rhizomagastrodiae_C368-T01_good_117.190
SRR6049663Rhizomagastrodiae_C368-T01_good_118.940
SRR6049664Rhizomagastrodiae_C368-T10_good_126.120
SRR6049665Rhizomagastrodiae_C368-T10_good_126.120
SRP279888GastroGastrodia elata tuber 15.47
JuvenJuvenile tuber13.06
Mother_GastroMother tuber of Gastrodia elata 13.51
Mother_JuvenMother tuber of Juvenile 15.93