Detail information of GWHGAAEX000730/evm.TU.scaffold_10.135
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|319789292|ref|YP_004150925.1| | 5.00E-08 | Ankyrin [Thermovibrio ammonificans HB-1] |
| KOG | KOG0521 | 0 | Putative GTPase activating proteins (GAPs) |
| nr | gi|694994953|ref|XP_009407936.1| | 0 | PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD4-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SMX5|AGD4_ARATH | 0 | ADP-ribosylation factor GTPase-activating protein AGD4 |
| trEMBL | tr|Q6H462|Q6H462_ORYSJ | 0 | Putative ADP-ribosylation factor-directed GTPase activating protein {ECO:0000313|EMBL:BAD26487.1} |
| TAIR | AT1G60860 | 0 | ARF-GAP domain 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000006 | 7399612 | 7523469 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000730
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16746.4 | BAR_3 | 7 | 230 | 1.10E-38 |
| PF00169.28 | PH | 295 | 395 | 5.20E-14 |
| PF01412.17 | ArfGap | 442 | 568 | 3.40E-33 |
| PF12796.6 | Ank_2 | 645 | 718 | 6.70E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12489 | ACAP | Endocytosis | map04144 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0005096 | Molecular Function | GTPase activator activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 100.650 |
| SRR2545915 | Juvenile tuber | 76.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.890 |
| SRR5643514 | five period of Gastrodia elata | 18.860 | |
| SRR5643515 | five period of Gastrodia elata | 24.600 | |
| SRR5643524 | five period of Gastrodia elata | 17.160 | |
| SRR5643525 | five period of Gastrodia elata | 20.640 | |
| SRR5643528 | five period of Gastrodia elata | 25.560 | |
| SRR5643658 | five period of Gastrodia elata | 25.110 | |
| SRR5643659 | five period of Gastrodia elata | 24.480 | |
| SRR5643660 | five period of Gastrodia elata | 26.470 | |
| SRR5643661 | five period of Gastrodia elata | 26.030 | |
| SRR5643662 | five period of Gastrodia elata | 25.890 | |
| SRR5643663 | five period of Gastrodia elata | 27.770 | |
| SRR5643664 | five period of Gastrodia elata | 25.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 36.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 40.490 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 47.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.54 |
| Juven | Juvenile tuber | 40.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.94 | |
| Mother_Juven | Mother tuber of Juvenile | 38.71 |