Detail information of GWHGAAEX000740/evm.TU.scaffold_10.147


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|645238477|ref|XP_008225697.1|4.20E-65PREDICTED: protein LSD1 [Prunus mume]
Swissprottr|Q2QMB3|LOL2_ORYSJ1.00E-57Protein LOL2
trEMBLtr|V7CN16|V7CN16_PHAVU2.00E-65Uncharacterized protein {ECO:0000313|EMBL:ESW31607.1}
TAIRAT4G203807.00E-49LSD1 zinc finger family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000682196668254487+
Transcript Sequence

Network for GWHGAAEX000740

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06943.11zf-LSD11201442.10E-07
PF06943.11zf-LSD11591832.60E-11
PF06943.11zf-LSD11972212.20E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-LSD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms39.820
SRR2545915Juvenile tuber38.860
SRP108465SRR5643513five period of Gastrodia elata36.240
SRR5643514five period of Gastrodia elata35.720
SRR5643515five period of Gastrodia elata42.180
SRR5643524five period of Gastrodia elata39.100
SRR5643525five period of Gastrodia elata56.930
SRR5643528five period of Gastrodia elata67.940
SRR5643658five period of Gastrodia elata57.610
SRR5643659five period of Gastrodia elata31.810
SRR5643660five period of Gastrodia elata43.730
SRR5643661five period of Gastrodia elata33.850
SRR5643662five period of Gastrodia elata35.930
SRR5643663five period of Gastrodia elata31.880
SRR5643664five period of Gastrodia elata30.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.640
SRR6049655Rhizomagastrodiae_C368-T10_good_134.230
SRR6049656Rhizomagastrodiae_C368-T07_good_127.880
SRR6049657Rhizomagastrodiae_C368-T07_good_128.220
SRR6049658Rhizomagastrodiae_C368-T04_good_129.260
SRR6049659Rhizomagastrodiae_C368-T04_good_133.360
SRR6049660Rhizomagastrodiae_C368-T01_good_131.990
SRR6049661Rhizomagastrodiae_C368-T04_good_130.920
SRR6049662Rhizomagastrodiae_C368-T01_good_134.430
SRR6049663Rhizomagastrodiae_C368-T01_good_140.410
SRR6049664Rhizomagastrodiae_C368-T10_good_143.380
SRR6049665Rhizomagastrodiae_C368-T10_good_143.380
SRP279888GastroGastrodia elata tuber 34.95
JuvenJuvenile tuber30.60
Mother_GastroMother tuber of Gastrodia elata 58.55
Mother_JuvenMother tuber of Juvenile 36.32