Gene detail

Detail information of GWHGAAEX000744/evm.TU.scaffold_10.156

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262194494\|ref\|YP_003265703.1\|	0	glycoside hydrolase [Haliangium ochraceum DSM 14365]
nr	gi\|695061082\|ref\|XP_009418960.1\|	0	PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|A5JTQ3\|XYL2_MEDSV	8.00E-35	Alpha-L-arabinofuranosidase (Precursor)
trEMBL	tr\|M0TZ54\|M0TZ54_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P10450_001}
TAIR	AT5G20950	0	Glycosyl hydrolase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000006	8735616	8740547	+

Transcript Sequence
>GWHTAAEX000744 AGAACACAAGACAAGCCTCAGTCGATTGTTTTGGTGGATTCTTAAATTCAAATTCTTTGAATTAGGACTTTAAGCCTACATGAGCAAGATTATCAGCAAGCAGGGGGGATTGGCTTATTTGCTGCATCTTAAGCTTTTAGCAATCACCCACATTATCTATACCTGTCCAGGTCTAGTTCAAACAAAAGAAAATCGTATTACAAAACTCTTAAACATAAAAATTATGAGTGGAACTAGCTAATTTAAACAATGAATTATATTATGGCTTAATCAAGAACTTAAATTCAATTAACTCATCAACTGCTTTCTTAAGAAATAAAAAAAAGGTTGTGTGAAGTGAGCCAATAGAAATCAAACCAAATGAGTTGCGCCGTTTTTTGAAATAATCCTGTTTTCGCTTACTGCGTAGGGATAGTTACTCGACCGTGGCTGCAGTTAAGACTCCTTAGGATATACTTTTTCTCGTACTTCCGGCATTCCATCTTCTTCTACCGAGTCAGTTCTACTTCCCCCCTCTACAAATGTTCACATTGCCGTGAAGAGGCTATTCCTAGCAAGGATGGATGGCAATGCTTTTGTCCTCACATGTGTTGAGGTTTTCACACTCCATCGTTTCATTTAAATGATCAGGATCCAAAGTGATTTAATGCTGAAGATGGGGGATTCCAGTTCATTCTTCCTGGGGTTTCTTTTCTTAATATGCTGCACTTCATTTGGAGAATCAGAATACATTAAGTACAAAGATCCAACTCAGCCAATCGATGACCGCGTTGAGGATTTGATTAACCGGATGACCCCTGAAGAGAAAATGGGCCAAATGATACAGATTGATAGAAAGGTTGCCTCAGCTCAAGCCATGAAAGACTACTTCATAGGCAGTGTTTTAAGTGGTGGGGGTAGTGTGCCTGCACCTCAGGCATCTGCGAAGGAATGGGTGGGCATGATAAATAGCATCCAAAATGGTGCGCTATCAACCAGGCTGGGGATTCCAATGATATATGGTATTGACGCTGTTCATGGGAATAACAATGTCTATGGTGCAACTATTTTCCCTCATAATATAGGCCTTGGTGCTACTAGAGATCCTGATCTTGTGAAGCAAATTGGCGCAGCAACTGCTCTTGAACTTCGGGCAATAGGCATACCATATGCTTTTGCTCCATGTATTGCGGTTTCTAGAGATCCAAGGTGGGGTAGGTGCTATGAAAGCTATAGTGAAGACCACACTATCGTGCAACAAATGACTTCAATAATACCTGGTTTGCAGGGGGATCTCCCTGCTGATGTAAAGAAGGGCACTCCATATGTTGCTGGAAAGGACAAGGTTGTAGCTTGTGCAAAGCATTTTGTGGGTGATGGAGGGACACAAATGGGAATTGACGAGAGTAATGCAATTATTAATCAGAATGAACTATTTGGTATCCACATGCCTGCATACTATAGCTCCGTTGAAGAGGGTGTTTCCACTATCATGATATCATACTCAAGCTTGAATGGAGTGAAAATGCATGCGAACCGAAATTTGATCACTGGTTTCCTAAAGAACACACTTCATTTTCAGGGCATTGTTATCTCAGATTGGGCGGGCATCGACAAAATAACTGACCCTCCTGGTTCAAACTATACTTACTCTGTGCAAGCATCAGTAAATGCCGGAATTGATCTGGTGATGGTTCCTTTTGACTACGCTGCATTCTTCAACAACCTCACTGCCCTTGTCAACCACAACGCTGTCCCTATGAGCAGAATAGATGATGCCGCGAGAAGGATTCTTCGAGTAAAATTCTTGGCAGGTCTATTTGAGAACCCTTATGCGGATCTCAGCTTGGCTGACCAGCTTGGAAAGGAGGAGCACAGGGAGCTGGCAAGGAAAGCTGTCAGGCAATCGCTTGTGCTGCTGAAAAATGGAAAATCTGGAAATGACCAAATTCTGCCATTGCCTAAGAAAGCTGAGAAAATCCTCATTGCCGGAAGCCATGCAGACAACTTGGGTTACCAGTGTGGCGGGTGGACCATTGAGTGGCAAGGAGCGAGCGGGAGAATCACTGCCGGAACAACAATCCTTGAAGCTATTAAGACAACAGTTGACCCTTCCACGGAAGTTGTCTACTCTGAAAATCCGAACAGCGACTTTATAAAAAGAGGCAATTTCCTGTATGCAGTCGTGGTGGTTGGGGAGAAACCGTACACTGAATTTTATGGCGACAGCATGAACCTGACGATCCCGGAGCCAGGTCCAAGCACTCTGCAGACAGTATGTGAGGCTGTTAAGTGTGTAGTTGTGCTTGTTACCGGCCGACCTGTTGTGATTGAGCCCTATGTTTCTGGAATGGATGCCCTTGTGGCTGCCTGGCTGCCCGGAAGTGAAGGCCAGGGAGTAGCCGATGTCCTCTTTGGAGATTACGGCTTCACTGGGAAGCTTCCCAGAACCTGGTTCAAGTCAGTGGATCAGTTGCCTATGAACTTTGGTGATGATCATTATGATCCATTATATCCCTTGGGTTATGGGTTGGTCACAGGAGCACTTGGAAGAGCTTAAGAGATGATGGATTCATGTTCCGGCTTCTTAGTTCTCTTCGTTGCTGCTGCTTGTTTTATTATTTTCTTGTGCTATATGATTCATGACATTAGAATTGGTTGTGAATCTGGTAATATCCAATGTATTGAAATCAATTTTAAAAAGACATTAGAATTGGTTATGTATTGGGACAGGACTTCTCCCGGGAAAATAATTTTGCGAGCCAAGCCGACTTGGCTCGCTATTTTATAGCCA

Network for GWHGAAEX000744

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00933.20	Glyco_hydro_3	60	386	3.30E-70
PF01915.21	Glyco_hydro_3_C	423	630	1.50E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05349	bglX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.770
SRP064423	SRR2545915	Juvenile tuber	0.760
SRP108465	SRR5643513	five period of Gastrodia elata	15.070
	SRR5643514	five period of Gastrodia elata	12.770
	SRR5643515	five period of Gastrodia elata	11.340
	SRR5643524	five period of Gastrodia elata	10.390
	SRR5643525	five period of Gastrodia elata	27.490
	SRR5643528	five period of Gastrodia elata	38.210
	SRR5643658	five period of Gastrodia elata	24.690
	SRR5643659	five period of Gastrodia elata	0.450
	SRR5643660	five period of Gastrodia elata	0.590
	SRR5643661	five period of Gastrodia elata	0.400
	SRR5643662	five period of Gastrodia elata	0.560
	SRR5643663	five period of Gastrodia elata	0.450
	SRR5643664	five period of Gastrodia elata	0.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.940
SRP279888	Gastro	Gastrodia elata tuber	0.34
	Juven	Juvenile tuber	0.32
	Mother_Gastro	Mother tuber of Gastrodia elata	13.28
	Mother_Juven	Mother tuber of Juvenile	6.88