Detail information of GWHGAAEX000749/evm.TU.scaffold_10.165


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189502235|ref|YP_001957952.1|4.00E-10hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2]
nrgi|743839054|ref|XP_010936891.1|1.53E-143PREDICTED: U-box domain-containing protein 21-like [Elaeis guineensis]
Swissprottr|Q9C8D1|PUB20_ARATH2.00E-93U-box domain-containing protein 20
trEMBLtr|K4AA08|K4AA08_SETIT2.00E-131Uncharacterized protein {ECO:0000313|EnsemblPlants:Si035714m}
TAIRAT1G661607.00E-93CYS, MET, PRO, and GLY protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000692009819202563-
Transcript Sequence

Network for GWHGAAEX000749

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04564.14U-box29993.70E-22
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.450
SRR2545915Juvenile tuber18.400
SRP108465SRR5643513five period of Gastrodia elata15.800
SRR5643514five period of Gastrodia elata5.270
SRR5643515five period of Gastrodia elata47.640
SRR5643524five period of Gastrodia elata5.510
SRR5643525five period of Gastrodia elata36.880
SRR5643528five period of Gastrodia elata12.100
SRR5643658five period of Gastrodia elata12.360
SRR5643659five period of Gastrodia elata27.780
SRR5643660five period of Gastrodia elata6.420
SRR5643661five period of Gastrodia elata9.380
SRR5643662five period of Gastrodia elata41.890
SRR5643663five period of Gastrodia elata22.000
SRR5643664five period of Gastrodia elata50.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_163.920
SRR6049655Rhizomagastrodiae_C368-T10_good_137.340
SRR6049656Rhizomagastrodiae_C368-T07_good_127.340
SRR6049657Rhizomagastrodiae_C368-T07_good_136.170
SRR6049658Rhizomagastrodiae_C368-T04_good_155.210
SRR6049659Rhizomagastrodiae_C368-T04_good_178.190
SRR6049660Rhizomagastrodiae_C368-T01_good_1125.210
SRR6049661Rhizomagastrodiae_C368-T04_good_174.260
SRR6049662Rhizomagastrodiae_C368-T01_good_122.430
SRR6049663Rhizomagastrodiae_C368-T01_good_164.790
SRR6049664Rhizomagastrodiae_C368-T10_good_125.780
SRR6049665Rhizomagastrodiae_C368-T10_good_125.780
SRP279888GastroGastrodia elata tuber 14.49
JuvenJuvenile tuber0.71
Mother_GastroMother tuber of Gastrodia elata 154.76
Mother_JuvenMother tuber of Juvenile 54.56