Detail information of GWHGAAEX000752/evm.TU.scaffold_10.171
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|148553071|ref|YP_001260653.1| | 9.00E-11 | hypothetical protein Swit_0144 [Sphingomonas wittichii RW1] |
| KOG | KOG4459 | 8.00E-100 | Membrane-associated proteoglycan Leprecan |
| nr | gi|672110987|ref|XP_008798338.1| | 9.82E-168 | PREDICTED: uncharacterized protein LOC103713247 [Phoenix dactylifera] |
| trEMBL | tr|M0U4G3|M0U4G3_MUSAM | 4.00E-157 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P29060_001} |
| TAIR | AT1G68080 | 8.00E-100 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000006 | 9474094 | 9501289 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000752
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13640.5 | 2OG-FeII_Oxy_3 | 91 | 173 | 5.00E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0031418 | Molecular Function | L-ascorbic acid binding |
| GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.640 |
| SRR2545915 | Juvenile tuber | 19.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.310 |
| SRR5643514 | five period of Gastrodia elata | 12.480 | |
| SRR5643515 | five period of Gastrodia elata | 13.260 | |
| SRR5643524 | five period of Gastrodia elata | 12.630 | |
| SRR5643525 | five period of Gastrodia elata | 16.840 | |
| SRR5643528 | five period of Gastrodia elata | 15.950 | |
| SRR5643658 | five period of Gastrodia elata | 17.770 | |
| SRR5643659 | five period of Gastrodia elata | 22.330 | |
| SRR5643660 | five period of Gastrodia elata | 17.290 | |
| SRR5643661 | five period of Gastrodia elata | 17.460 | |
| SRR5643662 | five period of Gastrodia elata | 24.650 | |
| SRR5643663 | five period of Gastrodia elata | 25.360 | |
| SRR5643664 | five period of Gastrodia elata | 20.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.27 |
| Juven | Juvenile tuber | 21.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 22.58 | |
| Mother_Juven | Mother tuber of Juvenile | 21.90 |