Gene detail

Detail information of GWHGAAEX000756/evm.TU.scaffold_10.181

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1277	Endosomal membrane proteins, EMP70
nr	gi\|672110947\|ref\|XP_008798135.1\|	PREDICTED: putative phagocytic receptor 1b [Phoenix dactylifera]
Swissprot	tr\|Q9ZPS7\|TMN3_ARATH	Transmembrane 9 superfamily member 3 {ECO:0000305} (Precursor)
trEMBL	tr\|M0RJ51\|M0RJ51_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P17760_001}
TAIR	AT2G01970	Endomembrane protein 70 protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000006	10350434	10380744	-

Transcript Sequence
>GWHTAAEX000756 CGTAAAGGTCCTATTATTAATTTTGGGATTATTCGCTTACTTTTATTATATAATATTCCATGGAGCGCGGACGCTCCCTGCCCACGGACCATGAAAATCGTCCTTTTTGTTGATTGATTACATGGCCGATTGGTCTCCGGGATTTGTTTTCTCGTCCACTTGGCTCTCTCCAGCGATTCGGGTCCATTACGAATCAAACTCCTATTTATTTTCAACTTTTTCGGTGGAGATCAGGGGATGGAACCGAAGATGATCTTCCCGGCGCTGGCAAAGCTATCGCTGCTTCTTTGTTTCGGGATCGTCGGAGTCGCATCGGACGCTTCCAATCATCGTTTTAAGCCCGACGAGTTTGTTCCCCTCTACGCCAACAAGGTCGGACCCTTTCATAACCCTAGTGAAACATATCGCTATTTTGACCTTCCCTTCTGTTCCCCAGCACCTGTGAAAGATAAATCAGAAGCTCTTGGTGAAGTTCTGAATGGTGATCGCTTGGTTGATGCTCCATACAGGCTGGACTTCCGGGTTGACTACGATTCAAAATCAGTATGCAAAAAGCAACTTACAAAAGAAGAAGTAGCAAAATTCAGGAGCGCAGTAGAAAAGGATTATTACTTTCAAATGTACTATGATGACCTTCCAATTTGGGGATTTATTGGGAAATTTGAGAAGGAAGGAAAGTCTGACCCTAGTGAGTACAAATTCTTCCTTTATCGGCATATCCTCTTTGAAGTTCTTTACAATAATGACCGTGTTATTGAGATCAACGTTCATACGGATACCAATTCAATGGTTGACATCACTGAGGATAAAGACATAGAGGTGGATTTTATGTACTCAGTGAAGTGGAAAGAAACAGACACACCATTTGAGAAGAGGATGGATAAGTATTCTCAGTCTTCTTCTCTGCCACATCACTTGGAAATTCACTGGTTCTCAATAATAAACTCATGTGTTACAGTTCTTCTTTTGACCGGATTCCTGGCAACCATTCTAATGAGGGTCCTCAAGAATGATTTTGTTAAGTATGCTCATGATGAGGAAACAGGTGATGACCAAGAAGAAACTGGATGGAAATATGTTCACGGAGATGTCTTTAGGTTCCCTAGAAACAAATCTTTACTAGCTGCCAGTCTTGGTTCAGGAACCCAGTTATTTGCTCTTACTATCTTCGTCTTTATGCTAGCGCTGGTGGGGGTATTCTATCCTTACAATAGAGGTGCTCTTTTTACTGCATTGGTGATTATTTACGCACTAACTTCAGGCATTTCTGGTTACACTGCCACTTCTTTTTACAGTCAGCTGGAAGGAAACAATTGGGTTCGGAATCTGCTATTGACGGGATTTCTCTTCTGTGGGCCTCTGTTCTTGACCTTCAGCTTCCTCAACACGGTAGCCATTGCGTATAATGCCACGGCTGCGTTGCCATTTGGCACCATTGTTGTGATTGTTCTAATTTGGGTTTTGGTAACATCCCCTCTACTCGTTTTGGGAGGGATTGCGGGCAAAAACAGCAAATCAGAGTTCCAAGCTCCTTGCCGCACCACCAAATACCCTCGTGAAATTCCACCTCTGCCTTGGTATCGGGGAACCATACCCCAGATGGCAATGGCCGGTTTCCTTCCTTTCAGCGCTATTTACATTGAGCTTTACTACATCTTTGCCAGCGTATGGGGTCACCGGATTTATACCATTTACAGCATTCTCTTTGTTGTTTTCATAATTCTCCTCATCGTCACCGCTTTCATTACTGTAGCAATGACCTACTTTCAGCTTGCTTCTGAAGATCATGAATGGTGGTGGAGGGCGTTCCTATGTGGAGGATCAACTGGTTTGTTCATTTATGCTTATTGCTTTTACTACTACCATGCCCGGTCGGACATGTCGGGATTCATGCAAACATCCTTCTTCTTTGGCTATATGGCCTGCATCTGCTACGGCTTCTTCCTCATGCTGGGCACCATAGGATTCCGTGCCTCACTGTTGTTCATCCGCCACATATACCGGTCCATAAAGTGCGAGTAGCTCTCCCGCGTCTGGCTGAAACAAAATGCAGCTTAATTTCCTTAATCATCTAGTAAGTTAGATGGGTCTTATGTTATTGAGCTTTTTGAATCATCTCTGCGTGTTCAAAAACGGTGATACATTCCTTGTGAGAATGAGGTGACGAAATGTGTAGCTGCTGTTAAGGAATTTGCAGCCTAAATTCGCTCTTTTAAAACTTTTCAGGTGCTTTGTAATATGGATGTTACTATTATCTAGTTCACAAGAAATTTCCTTGTAAAATCGAACAATTCAGTGCTGTGTTTGCTTATTTTTGTTAAATGCATAAGCCGTATTAGGGGGAATTAATCAAGCTCGATTCTATATATCAATTTGCGAGTCGAGCTCAATCAGCTAAGCGTCAAAGTTTGAGCTAATACTGACTCGACTGATTAGCTAGTGAGCTTGCTTGTAAATAGACAACAAGCCCATTTTAATGCAATGTTTCC

Network for GWHGAAEX000756

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02990.15	EMP70	56	551	2.90E-170

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	690.350
SRP064423	SRR2545915	Juvenile tuber	510.500
SRP108465	SRR5643513	five period of Gastrodia elata	243.470
	SRR5643514	five period of Gastrodia elata	200.780
	SRR5643515	five period of Gastrodia elata	211.820
	SRR5643524	five period of Gastrodia elata	209.120
	SRR5643525	five period of Gastrodia elata	219.720
	SRR5643528	five period of Gastrodia elata	204.860
	SRR5643658	five period of Gastrodia elata	216.340
	SRR5643659	five period of Gastrodia elata	281.630
	SRR5643660	five period of Gastrodia elata	314.850
	SRR5643661	five period of Gastrodia elata	310.270
	SRR5643662	five period of Gastrodia elata	228.210
	SRR5643663	five period of Gastrodia elata	224.790
	SRR5643664	five period of Gastrodia elata	294.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	308.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	248.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	261.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	359.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	405.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	486.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	344.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	394.770
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	244.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	310.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	237.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	237.900
SRP279888	Gastro	Gastrodia elata tuber	183.07
	Juven	Juvenile tuber	203.85
	Mother_Gastro	Mother tuber of Gastrodia elata	160.10
	Mother_Juven	Mother tuber of Juvenile	166.80