Detail information of GWHGAAEX000760/evm.TU.scaffold_100.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1558 | 5.00E-143 | Fe2+/Zn2+ regulated transporter |
| nr | gi|695056170|ref|XP_009416298.1| | 6.15E-155 | PREDICTED: zinc transporter 6, chloroplastic [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|O64738|ZIP6_ARATH | 2.00E-143 | Zinc transporter 6, chloroplastic (Precursor) |
| trEMBL | tr|M0TXF8|M0TXF8_MUSAM | 2.00E-155 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P04490_001} |
| TAIR | AT2G30080 | 5.00E-143 | ZIP metal ion transporter family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000099 | 88597 | 110574 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000760
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02535.21 | Zip | 23 | 334 | 1.00E-63 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0071577 | Biological Process | zinc II ion transmembrane transport |
| GO:0046873 | Molecular Function | metal ion transmembrane transporter activity |
| GO:0005385 | Molecular Function | zinc ion transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 26.710 |
| SRR2545915 | Juvenile tuber | 28.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.520 |
| SRR5643514 | five period of Gastrodia elata | 33.890 | |
| SRR5643515 | five period of Gastrodia elata | 30.260 | |
| SRR5643524 | five period of Gastrodia elata | 32.160 | |
| SRR5643525 | five period of Gastrodia elata | 73.040 | |
| SRR5643528 | five period of Gastrodia elata | 52.420 | |
| SRR5643658 | five period of Gastrodia elata | 53.870 | |
| SRR5643659 | five period of Gastrodia elata | 21.880 | |
| SRR5643660 | five period of Gastrodia elata | 22.360 | |
| SRR5643661 | five period of Gastrodia elata | 21.270 | |
| SRR5643662 | five period of Gastrodia elata | 27.330 | |
| SRR5643663 | five period of Gastrodia elata | 23.490 | |
| SRR5643664 | five period of Gastrodia elata | 25.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 40.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 38.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 44.290 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 39.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.61 |
| Juven | Juvenile tuber | 34.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 40.65 | |
| Mother_Juven | Mother tuber of Juvenile | 33.43 |