Detail information of GWHGAAEX000765/evm.TU.scaffold_100.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|72162193|ref|YP_289850.1| | 9.00E-11 | calcium-binding EF-hand [Thermobifida fusca YX] |
| KOG | KOG0027 | 1.00E-34 | Calmodulin and related proteins (EF-Hand superfamily) |
| nr | gi|743892714|ref|XP_010911621.1| | 5.54E-52 | PREDICTED: putative calcium-binding protein CML19 [Elaeis guineensis] |
| Swissprot | tr|Q8RYK0|CML31_ORYSJ | 4.00E-47 | Probable calcium-binding protein CML31 |
| trEMBL | tr|D2CIU9|D2CIU9_ELAGV | 3.00E-52 | Calmodulin-like protein {ECO:0000313|EMBL:ABP04242.1} (Fragment) |
| TAIR | AT1G76640 | 1.00E-34 | Calcium-binding EF-hand family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000099 | 265687 | 266115 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000765
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13833.5 | EF-hand_8 | 21 | 69 | 2.90E-11 |
| PF13833.5 | EF-hand_8 | 92 | 141 | 2.00E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13448 | CML | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.500 |
| SRR2545915 | Juvenile tuber | 8.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 45.100 |
| SRR5643514 | five period of Gastrodia elata | 56.370 | |
| SRR5643515 | five period of Gastrodia elata | 76.740 | |
| SRR5643524 | five period of Gastrodia elata | 42.110 | |
| SRR5643525 | five period of Gastrodia elata | 37.690 | |
| SRR5643528 | five period of Gastrodia elata | 10.770 | |
| SRR5643658 | five period of Gastrodia elata | 14.710 | |
| SRR5643659 | five period of Gastrodia elata | 88.280 | |
| SRR5643660 | five period of Gastrodia elata | 12.070 | |
| SRR5643661 | five period of Gastrodia elata | 47.860 | |
| SRR5643662 | five period of Gastrodia elata | 61.080 | |
| SRR5643663 | five period of Gastrodia elata | 29.860 | |
| SRR5643664 | five period of Gastrodia elata | 168.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 141.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 55.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 98.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 87.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 125.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 139.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 123.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 135.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 114.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 181.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 252.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 252.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.81 |
| Juven | Juvenile tuber | 7.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 41.06 | |
| Mother_Juven | Mother tuber of Juvenile | 25.15 |