Detail information of GWHGAAEX000769/evm.TU.scaffold_100.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428769412|ref|YP_007161202.1|4.00E-30translation initiation factor 3 (bIF-3) [Cyanobacterium aponinum PCC 10605]
nrgi|743866254|ref|XP_010905021.1|7.89E-87PREDICTED: translation initiation factor IF-3, chloroplastic isoform X1 [Elaeis guineensis]
Swissprottr|Q1XDQ6|IF3C_PYRYE2.00E-24Translation initiation factor IF-3, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00080}
trEMBLtr|M0RQW8|M0RQW8_MUSAM1.00E-83Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P09880_001}
TAIRAT2G240602.00E-59Translation initiation factor 3 protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000099351895422372+
Transcript Sequence

Network for GWHGAAEX000769

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05198.15IF3_N851535.90E-17
PF00707.21IF3_C1642471.00E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006413Biological Processtranslational initiation
GO:0003743Molecular Functiontranslation initiation factor activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.220
SRR2545915Juvenile tuber15.740
SRP108465SRR5643513five period of Gastrodia elata12.750
SRR5643514five period of Gastrodia elata10.800
SRR5643515five period of Gastrodia elata12.340
SRR5643524five period of Gastrodia elata11.390
SRR5643525five period of Gastrodia elata18.430
SRR5643528five period of Gastrodia elata24.880
SRR5643658five period of Gastrodia elata23.640
SRR5643659five period of Gastrodia elata16.370
SRR5643660five period of Gastrodia elata17.540
SRR5643661five period of Gastrodia elata16.120
SRR5643662five period of Gastrodia elata14.310
SRR5643663five period of Gastrodia elata16.910
SRR5643664five period of Gastrodia elata13.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.990
SRR6049655Rhizomagastrodiae_C368-T10_good_115.280
SRR6049656Rhizomagastrodiae_C368-T07_good_112.620
SRR6049657Rhizomagastrodiae_C368-T07_good_19.760
SRR6049658Rhizomagastrodiae_C368-T04_good_18.160
SRR6049659Rhizomagastrodiae_C368-T04_good_17.080
SRR6049660Rhizomagastrodiae_C368-T01_good_19.010
SRR6049661Rhizomagastrodiae_C368-T04_good_110.460
SRR6049662Rhizomagastrodiae_C368-T01_good_114.200
SRR6049663Rhizomagastrodiae_C368-T01_good_110.730
SRR6049664Rhizomagastrodiae_C368-T10_good_110.360
SRR6049665Rhizomagastrodiae_C368-T10_good_110.360
SRP279888GastroGastrodia elata tuber 11.30
JuvenJuvenile tuber6.74
Mother_GastroMother tuber of Gastrodia elata 9.40
Mother_JuvenMother tuber of Juvenile 9.04