Detail information of GWHGAAEX000771/evm.TU.scaffold_100.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434385068|ref|YP_007095679.1| | 9.00E-19 | glycosyl transferase [Chamaesiphon minutus PCC 6605] |
| nr | gi|359484896|ref|XP_002276890.2| | 0 | PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Vitis vinifera] |
| Swissprot | tr|Q69P51|CESA9_ORYSJ | 0 | Cellulose synthase A catalytic subunit 9 [UDP-forming] |
| trEMBL | tr|D7U1D5|D7U1D5_VITVI | 0 | Cellulose synthase {ECO:0000256|RuleBase:RU361116} |
| TAIR | AT5G17420 | 0 | Cellulose synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000099 | 464926 | 470875 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000771
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14569.5 | zf-UDP | 27 | 103 | 2.00E-40 |
| PF03552.13 | Cellulose_synt | 333 | 1032 | 0 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.210 |
| SRR2545915 | Juvenile tuber | 2.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.900 |
| SRR5643514 | five period of Gastrodia elata | 5.440 | |
| SRR5643515 | five period of Gastrodia elata | 5.840 | |
| SRR5643524 | five period of Gastrodia elata | 5.580 | |
| SRR5643525 | five period of Gastrodia elata | 252.040 | |
| SRR5643528 | five period of Gastrodia elata | 228.210 | |
| SRR5643658 | five period of Gastrodia elata | 577.090 | |
| SRR5643659 | five period of Gastrodia elata | 4.320 | |
| SRR5643660 | five period of Gastrodia elata | 3.770 | |
| SRR5643661 | five period of Gastrodia elata | 4.240 | |
| SRR5643662 | five period of Gastrodia elata | 5.570 | |
| SRR5643663 | five period of Gastrodia elata | 6.940 | |
| SRR5643664 | five period of Gastrodia elata | 4.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.880 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.70 |
| Juven | Juvenile tuber | 1.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.26 | |
| Mother_Juven | Mother tuber of Juvenile | 1.67 |