Detail information of GWHGAAEX000779/evm.TU.scaffold_100.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428208282|ref|YP_007092635.1|4.00E-13WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
KOGKOG02640Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1
nrgi|332806931|gb|AEF01212.1|0FVE [x Doritaenopsis hybrid cultivar]
Swissprottr|O22607|MSI4_ARATH0WD-40 repeat-containing protein MSI4
trEMBLtr|F6M058|F6M058_9ASPA0FVE {ECO:0000313|EMBL:AEF01212.1}
TAIRAT2G195200Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000099893205904005+
Transcript Sequence

Network for GWHGAAEX000779

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12265.7CAF1C_H4-bd14802.80E-18
PF00400.31WD402402770.049
PF00400.31WD402903220.0023
PF00400.31WD403323713.40E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K10752RBBP4, HAT2, CAF1, MIS16 Cellular senescence map04218

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms128.260
SRR2545915Juvenile tuber110.000
SRP108465SRR5643513five period of Gastrodia elata114.900
SRR5643514five period of Gastrodia elata125.360
SRR5643515five period of Gastrodia elata108.680
SRR5643524five period of Gastrodia elata111.250
SRR5643525five period of Gastrodia elata91.980
SRR5643528five period of Gastrodia elata88.690
SRR5643658five period of Gastrodia elata80.760
SRR5643659five period of Gastrodia elata104.980
SRR5643660five period of Gastrodia elata113.060
SRR5643661five period of Gastrodia elata105.140
SRR5643662five period of Gastrodia elata108.780
SRR5643663five period of Gastrodia elata106.970
SRR5643664five period of Gastrodia elata116.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1191.480
SRR6049655Rhizomagastrodiae_C368-T10_good_1151.780
SRR6049656Rhizomagastrodiae_C368-T07_good_1187.520
SRR6049657Rhizomagastrodiae_C368-T07_good_1204.090
SRR6049658Rhizomagastrodiae_C368-T04_good_1328.650
SRR6049659Rhizomagastrodiae_C368-T04_good_1373.860
SRR6049660Rhizomagastrodiae_C368-T01_good_1247.650
SRR6049661Rhizomagastrodiae_C368-T04_good_1268.330
SRR6049662Rhizomagastrodiae_C368-T01_good_1225.370
SRR6049663Rhizomagastrodiae_C368-T01_good_1303.200
SRR6049664Rhizomagastrodiae_C368-T10_good_1183.770
SRR6049665Rhizomagastrodiae_C368-T10_good_1183.770
SRP279888GastroGastrodia elata tuber 162.84
JuvenJuvenile tuber108.46
Mother_GastroMother tuber of Gastrodia elata 109.97
Mother_JuvenMother tuber of Juvenile 112.43