Gene detail

Detail information of GWHGAAEX000781/evm.TU.scaffold_100.34

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695064962\|ref\|XP_009421055.1\|	2.92E-170	PREDICTED: recQ-mediated genome instability protein 1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q5XUX6\|RMI1_ARATH	7.00E-131	RecQ-mediated genome instability protein 1
trEMBL	tr\|M0RHF4\|M0RHF4_MUSAM	2.00E-166	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P11780_001}
TAIR	AT5G63540	4.00E-99	Domain of unknown function (DUF1767)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000099	1000540	1068514	+

Transcript Sequence
>GWHTAAEX000781 ATGTTGGGAAAGAGAAGGAATCTTCGTTTACCTAGCTCCTCCGACGAGGATGACGAACCACCTGCGCACTCGCCTCCAATGCCTCTTCAAAACGTTCCTATGGAGATATCGGACGACGAGTTTGTGGACGTAGCGGAGGCACTCTCCGAGCATTCCCCAACTCCGGTTTCTGTCCAGAATCCCGGCGATACCTCCGACAGAGCCGAGGCTTCGGCCGATGATTTCCAAAACTTTTCTTCCGTGCAAATCGGTGAGTTTCTCCGGTCCGCGGGTCTAGGGCTTCGGCAGGCATGGCTAGCTTCTTGTATGGCCGGCTTGATTGATGCTGTTCCAGGATTTGAGGGATTTGATAATACCAGGAAGGCGAGGGCATGCTTTGAGCAGTTTCTCAACGCGGACATGAACTATTGTGGAGCTGGAATCCTGCCGGAGAATGTGCACTGCATGCACAATGTCGAATTAGAGGGACCTTTCGTGTTGCAGGTTGATGAAATAACCAATATAAGCTGTTCGCTTAGAGAGCGATATCATGATTCACCGGCCAGCTCAAAAAGATGTTTGAAATTATCATTATCAGATGGTGTGCAGCATGTCTTTGGCATGGAGTATAGGCCTATACATGATTTAAAAGCTCTTATGCATTCTGGTTTGAAGATTATCCTACGAAATGTACAAATTCGAAGGGGACTTTTATTACTTCTTCCTGAAGTTGTGGAGGTTCTTGGAGGGGTGGTTGAGGATTTAGATGCGGCACGTCTGAGGCTTATTACTGAAATAAACAAACCCCCTAGAGGAAAAAGGAAACAAGCCTTACTTTCTTTGTGCCAAAGAGCCACCCTTGCAGCATGGCCTCCTAATACTGTTAGTAGTAATGAAGCGAATACGTTTGAAAGTAACATCAACAATAATGGTTCACAAGCAGATATTTCTGTGCCACTTACTCTAAGCGATGCCTGCACGGTTCACGATGGTAGAATTTCATCAGGTACTGTCACCGAGAGACCATATGCTGTAGAAGTTGTTGGTTTTAACACAAAAAGAGATAACTTTGAAGGCCAGGTTTCTCATGATAATATTAGAAATCTCAATGAAGAATTTGTCAGTGTCAATGAAAGTTTTGCAGAATTGCCTAATTATGAAAACAGCTTAACTACTAAATCTCACTTGGCCATTGATGTTGCTGAGGATGTGCAAGAAGGGCATACTATAAATGAAGATGGTTCAATCAATGAATTGAACGGCCCCATTATTCTGACTGGAGAGAAAGAAATTCCTTTTACATATTTGGCATGCATGCTTGCAAAATTGGTCGTTGAAGAGGAAAGGACATCAGTCATTCAAGGAAGAATTAAGTGTATTTTGACTGGTGTGAAGAGATTCCAGTTCAAGCATCGGAGTACCTATGAACTAATTGTTTATGTTGATGATGGTAGTTACATATCTGAAATCTTCATTGATCACAATGTTGTACAAAGTAGGATAGGCTACTCACCTGAAGATGTTGCTACTGCTCTTTCTTCATCAAACAAAAAGATAAAATCAGATATGACAGATGCCATGAAAAAATATCAAGTATTCTTATCTATGTTTGAGGGTACAATGCTTGTGGAGATAAGCAAGGATTTTCCATATCCTGTGGGTCGTCAGATGAATCAGGGTTGTTCAGTTTCTGATGCTTGGCTTCTTCTAAGGAGATTGAGGAGCTTTACATCTCCGAATCTGCAGCATGACTCTCGGGAGCCTATCATTTTATCTCCTTGA

Network for GWHGAAEX000781

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08585.11	RMI1_N	91	252	2.20E-37
PF16099.4	RMI1_C	425	566	2.00E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10990	RMI1, BRAP75	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0000166	Molecular Function	nucleotide binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.710
SRP064423	SRR2545915	Juvenile tuber	0.500
SRP108465	SRR5643513	five period of Gastrodia elata	0.640
	SRR5643514	five period of Gastrodia elata	0.580
	SRR5643515	five period of Gastrodia elata	0.340
	SRR5643524	five period of Gastrodia elata	0.380
	SRR5643525	five period of Gastrodia elata	0.390
	SRR5643528	five period of Gastrodia elata	0.230
	SRR5643658	five period of Gastrodia elata	0.350
	SRR5643659	five period of Gastrodia elata	0.600
	SRR5643660	five period of Gastrodia elata	0.450
	SRR5643661	five period of Gastrodia elata	0.620
	SRR5643662	five period of Gastrodia elata	0.160
	SRR5643663	five period of Gastrodia elata	0.280
	SRR5643664	five period of Gastrodia elata	0.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.730
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.530
SRP279888	Gastro	Gastrodia elata tuber	0.33
	Juven	Juvenile tuber	0.53
	Mother_Gastro	Mother tuber of Gastrodia elata	0.77
	Mother_Juven	Mother tuber of Juvenile	1.12