Gene detail

Detail information of GWHGAAEX000787/evm.TU.scaffold_100.44

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502744\|ref\|YP_001958461.1\|	3.00E-45	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
KOG	KOG0192	0	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
nr	gi\|731385024\|ref\|XP_010648359.1\|	0	PREDICTED: serine/threonine-protein kinase EDR1 [Vitis vinifera]
Swissprot	tr\|Q9FPR3\|EDR1_ARATH	8.00E-150	Serine/threonine-protein kinase EDR1
trEMBL	tr\|M0TFZ2\|M0TFZ2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P09040_001}
TAIR	AT5G11850	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000099	1245395	1301350	-

Transcript Sequence
>GWHTAAEX000787 CAATTTTCATACAAAACAAAGGATTTTTCGATAAAAGGGTTAAACGGGCTGGGCTTTTAGGCCACTAGCCCAAATCAAAATCACACGCTACCCTCCTCACTCAGTCACGCCGCTCCTTCCCCCGATTTCCAGTCAACGCGTTCACCTCATGCCCTTCTGTATCTTCTTTGTTGCTATTCTTGCGCACGCTTCCTTGGACAGCAAGCAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAGTGCAGCACTGGCTCGTCAGTCTCAATTCCTTCACACAAGAGACGGTGGCTCATAAAGCAACCAAGCGCACTGAACGCTTCACCAAATCTAAGAATCTTGCCTTTTCCAGCAATTAGATTAATAGGAACCCAGCAGGGCCAGCACCACCAAGCCACGAACCCCCCGCCGCATTTATATACAGACAGACGAGGAAGAAACAAGGAGGCTCCCGATCTGATGCTTCATGTCGAGAATGAAACACCTCCTTCGCAAGCTGCACATCGGTAGCGGCGGACTCGAGCATCAGCATCCCCATCACCATCGATTGGGTGAACCAAGAACAGATACGACGCCACTACAGAAGTCTCCGCCGGCATCGTTACCTTCGTCATCCATAGCCTGTACTAATTCCTTGTCCTCGATGGATGGAGCTGAGAGAAAAGCCGGAGGATCACGAAGCGAAGTGATCTCATCGCCTGCTGGGGGCGGCGGGGGTGATTTTAGCCTCTTGGAAGAGGAGTACCATGTGCAGTTAGCCTTGGCGATCAGCGCAACGGATCCTGATGGAATCGATGATTTAGATTCTGTGCAAATCAAGGCCGCTAAACAGATGAGTCTAGAGACTGCATCGGCAACAGTTAGTGGTGGAGCGAGCATAGAAAACAACATGGAGTTCCTGTCGCTTCGATATTGGAACTATAATGTTGTGAACTATGATGAAAAATTAATGGATGGGTTTTATGATGTATATGGTATTATCTCTAACCCTGATACAAAGATGCCTTCACTGGTCGTTCTTCAAGCTACCTCTGCTACTGAGGCAGTAGAATATGAAGTAGTTCTGTTGAATCGAACTGTAGATAATGCATTGCTGCAGTTGGAGAAGAGGGCATTACTTATAGCTTCAGAATGTAGTGCAATAAAAAATGGACCTATAGCTAGTGGTTTGATTCAAAAAATTGCTGATCTTGTTGCTGAAAATATGGGTGGCCCTGTTGAAGATGCTGATGATATTTTGAGAAGGTGGATTATCAGAAGTCAAGAATTGCGCACTTCTCTGAATACTATTGTTTTCCCGCTTGGTTTACTTGGAGTTGGATTGTCACGCCACAGGGCCTTACTTTTTAAGGTACTAGCTGATCGGATTGAGCTTCCATGTAAGCTAGTGAAAGGGAGTTATTACACTGGTACAGATGAAGGTGCCATAAATTTAATTAAAGTTGATTTTGAGAGTGAATATATCGTTGATCTTATGGGAGCTCCTGGAACATTAATTCCTGCTGAAGTTCCCAGTAGCCATCTTCAAAATTCTGGAACTCTCCTGCATGGCGTTGATACAATTGAACAGTCTGTTAAAGATCTTTGCCTGGCACTTGATAAAGTTACGGGTCAGTTAGAGAAGAAAAATGAAGTACCAGATGTAAGCATTCCTGATAATAGTTGTTCTATTTTGGGAACTTTCCTGCATTCACCTTTACAAGAAAAACCAGAACACTTGTGTGAAGGCGATTATGTAAGGGCCGAGGGACAAAGTCAAACTGAAGGATTTAAAAAAGAAAGTGAGGCAGTTGCTCAAATAAGTGGAGCACAAAGAGACAATTTTGGAATTACAGGTGGTATATCACCTGTTGAACAGATGAAAGTTAATGATGTATCGAAGTACGTTGTAACTGCTGCAAAAAACCCAGAATTTGCACGGAAGCTCCATGCTGTTCTGTTGGAGAGTGGTGCTTCTCCTCCATTGGATTTGTTTTCAAACTTAAATACTGTACATGAAGTTGTAGACCAAAGGATGCCAGCAAACAACATAGGCATAGAAAGAAGGCTAGGTAGAGAAGATGGCAAGGAAGAACTGACTTTATCTGTGTCTGCAAATCCTATAATTGCAAGAGAACCTTCTCTTTTTTTGAAGACTAATCATGGTTTTAATTTAGATGGTTCTCAGTTAGAGGGATGTCTTCCTGCAAATGAGGTTGGTGCAAGGCACAATGGATCTGCTAGGAATACTATTGCATCCATTCAACACTCTGAGGCAAAAGAGGAATCAAACGATAATGATTTGCATATGTCTAGTCATTCTGAGAAAGAATATTTCCCAGCAATTTTGGATGGCGTTGCTGAGTGGGAGATTCCATGGGAAGATCTCCAGATAGGTGAGCGAATTGGCCTAGGTTCTTATGGGGAGGTATATCGGGCTGATTGGAATGGCACTGATGTTGCTGTAAAGAAATTCTTGGATCAGGATCTATCAGGAGATGCATTGGAACTATTCAGATGTGAAGTCAAAATTATGTTGAGGCTACGCCACCCGAATGTGGTTCTTTTTATGGGTGCTGTCACAAGACCGCCTAATCTCTCTATTTTGACAGAGTTTCTACCAAGGGGAAGTTTATATAGGCTGCTTCATCGCCCCAATGTGAAACTTGAAGAAAAACGACGGATGAAGATGGCATTGGATGTGGCAAAAGGAATGAATTACTTGCACACAAGCCATCCTACTATTGTGCATCGTGATTTGAAGTCCCCAAATCTCCTTGTGGATAGAAATTGGGTTGTTAAGGTTTGTGATTTTGGCTTGTCAAGGTTAAAGCATCACACCTTCTTATCTTCAAAGTCAACTGCTGGAACTCCAGAATGGATGGCTCCCGAAGTTTTGCGAAATGAGCCTTCCAGTGAGAAGTGCGACATCTACAGTTTTGGCGTGATTCTATGGGAATTGGCTACCATGCGCATGCCATGGAGCGGAATGAATCCGATGCAGGTTGTTGGAGCGGTTGGTTACCAGAACAAGCGCCTCAGCATACCCCAAGAAATCGATCCCATGGTCTCTAAAATAATCACGGACTGTTGGGAAAGCGATCCCAACCGGCGTCCCTCTTTTGCCCAGCTGTTGCTAGAACTCAAGCAACTGCAGAGACTGGTTGTCCCTGCCAGCTGACACATCTCCCACTCTCTTTTGTTCTTTCCCTGCCCTGCTCTTAGCTTGTAAAAAATAAAAAATTAAAAACCCGCCAGAATCTCACAAGAACTGATTCATTGTTCTGCAAACCTAAACGGTTTCATCTGCTTAGTCTCTCTCTCTCTCTCTGAAGCTGTGCAAGTGCAGCGGAAGAGCCAAATGCATGGGAAGAACATAGGCACGCCGCCCGCCAGTCTTGTTTTATTCCTTCCCCATTGGAAACATGGGAGCCTGTGCTGAAGAGCACGATATTTGAAGTATAAATATGTATTATTTCTATATATGAGTCCTTATTGTTTTGTATCA

Network for GWHGAAEX000787

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14381.5	EDR1	143	344	3.10E-67
PF07714.16	Pkinase_Tyr	634	885	6.80E-66

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL_CTR1-DRK-2

KEGG pathway

KO	Enzyme	pathway	mapID
K04424	ZAK, MLTK	MAPK signaling pathway	map04010

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.190
SRP064423	SRR2545915	Juvenile tuber	24.590
SRP108465	SRR5643513	five period of Gastrodia elata	48.050
	SRR5643514	five period of Gastrodia elata	48.710
	SRR5643515	five period of Gastrodia elata	45.900
	SRR5643524	five period of Gastrodia elata	45.850
	SRR5643525	five period of Gastrodia elata	77.360
	SRR5643528	five period of Gastrodia elata	70.890
	SRR5643658	five period of Gastrodia elata	65.710
	SRR5643659	five period of Gastrodia elata	33.590
	SRR5643660	five period of Gastrodia elata	34.390
	SRR5643661	five period of Gastrodia elata	35.400
	SRR5643662	five period of Gastrodia elata	37.650
	SRR5643663	five period of Gastrodia elata	34.310
	SRR5643664	five period of Gastrodia elata	41.790
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	41.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	36.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.280
SRP279888	Gastro	Gastrodia elata tuber	15.16
	Juven	Juvenile tuber	38.08
	Mother_Gastro	Mother tuber of Gastrodia elata	29.64
	Mother_Juven	Mother tuber of Juvenile	35.24