Detail information of GWHGAAEX000795/evm.TU.scaffold_100.53
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|339482299|ref|YP_004694085.1| | 1.00E-85 | DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp. Is79A3] |
| KOG | KOG0334 | 0 | RNA helicase |
| nr | gi|672138991|ref|XP_008793268.1| | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like [Phoenix dactylifera] |
| Swissprot | tr|Q8H0U8|RH42_ARATH | 0 | DEAD-box ATP-dependent RNA helicase 42 |
| trEMBL | tr|V7CJE2|V7CJE2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW29026.1} |
| TAIR | AT1G20920 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000099 | 1618472 | 1622239 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000795
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 527 | 698 | 7.80E-48 |
| PF00271.30 | Helicase_C | 735 | 844 | 4.90E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12811 | DDX46, PRP5 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 67.930 |
| SRR2545915 | Juvenile tuber | 58.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 47.430 |
| SRR5643514 | five period of Gastrodia elata | 37.420 | |
| SRR5643515 | five period of Gastrodia elata | 39.780 | |
| SRR5643524 | five period of Gastrodia elata | 38.720 | |
| SRR5643525 | five period of Gastrodia elata | 36.500 | |
| SRR5643528 | five period of Gastrodia elata | 32.170 | |
| SRR5643658 | five period of Gastrodia elata | 36.570 | |
| SRR5643659 | five period of Gastrodia elata | 49.140 | |
| SRR5643660 | five period of Gastrodia elata | 48.500 | |
| SRR5643661 | five period of Gastrodia elata | 45.530 | |
| SRR5643662 | five period of Gastrodia elata | 44.330 | |
| SRR5643663 | five period of Gastrodia elata | 41.560 | |
| SRR5643664 | five period of Gastrodia elata | 46.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 53.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 46.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 66.990 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 59.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 74.760 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 64.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 61.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.350 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 49.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.880 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.880 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 42.02 |
| Juven | Juvenile tuber | 90.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.28 | |
| Mother_Juven | Mother tuber of Juvenile | 59.45 |