Detail information of GWHGAAEX000796/evm.TU.scaffold_100.56
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695042535|ref|XP_009408926.1| | 1.50E-42 | PREDICTED: probable WRKY transcription factor 50 isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q93WU9|WRK51_ARATH | 2.00E-34 | Probable WRKY transcription factor 51 |
| trEMBL | tr|M0TG56|M0TG56_MUSAM | 6.00E-43 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P09680_001} |
| TAIR | AT5G26170 | 5.00E-34 | WRKY DNA-binding protein 50 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000099 | 1682300 | 1685863 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000796
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03106.14 | WRKY | 104 | 161 | 1.70E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | WRKY |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.170 |
| SRR2545915 | Juvenile tuber | 0.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.160 |
| SRR5643514 | five period of Gastrodia elata | 6.630 | |
| SRR5643515 | five period of Gastrodia elata | 7.530 | |
| SRR5643524 | five period of Gastrodia elata | 4.600 | |
| SRR5643525 | five period of Gastrodia elata | 0.940 | |
| SRR5643528 | five period of Gastrodia elata | 1.270 | |
| SRR5643658 | five period of Gastrodia elata | 0.910 | |
| SRR5643659 | five period of Gastrodia elata | 5.900 | |
| SRR5643660 | five period of Gastrodia elata | 4.690 | |
| SRR5643661 | five period of Gastrodia elata | 10.540 | |
| SRR5643662 | five period of Gastrodia elata | 2.450 | |
| SRR5643663 | five period of Gastrodia elata | 1.480 | |
| SRR5643664 | five period of Gastrodia elata | 3.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.30 |
| Juven | Juvenile tuber | 0.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.27 | |
| Mother_Juven | Mother tuber of Juvenile | 1.14 |