Detail information of GWHGAAEX000797/evm.TU.scaffold_100.58


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG47085.00E-43Mitochondrial ribosomal protein MRP17
nrgi|672121085|ref|XP_008783836.1|1.06E-62PREDICTED: uncharacterized protein LOC103702956 [Phoenix dactylifera]
trEMBLtr|M0T6X7|M0T6X7_MUSAM2.00E-56Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P14290_001}
TAIRAT3G187605.00E-43Translation elongation factor EF1B/ribosomal protein S6 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009917065761733216+
Transcript Sequence

Network for GWHGAAEX000797

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01250.16Ribosomal_S64951.80E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02990RP-S6, MRPS6, rpsF Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0019843Molecular FunctionrRNA binding
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms38.150
SRR2545915Juvenile tuber48.750
SRP108465SRR5643513five period of Gastrodia elata64.570
SRR5643514five period of Gastrodia elata58.580
SRR5643515five period of Gastrodia elata59.740
SRR5643524five period of Gastrodia elata66.780
SRR5643525five period of Gastrodia elata61.140
SRR5643528five period of Gastrodia elata58.700
SRR5643658five period of Gastrodia elata52.620
SRR5643659five period of Gastrodia elata59.420
SRR5643660five period of Gastrodia elata61.910
SRR5643661five period of Gastrodia elata67.460
SRR5643662five period of Gastrodia elata59.010
SRR5643663five period of Gastrodia elata64.740
SRR5643664five period of Gastrodia elata53.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.860
SRR6049655Rhizomagastrodiae_C368-T10_good_167.200
SRR6049656Rhizomagastrodiae_C368-T07_good_152.730
SRR6049657Rhizomagastrodiae_C368-T07_good_135.520
SRR6049658Rhizomagastrodiae_C368-T04_good_141.480
SRR6049659Rhizomagastrodiae_C368-T04_good_138.900
SRR6049660Rhizomagastrodiae_C368-T01_good_137.150
SRR6049661Rhizomagastrodiae_C368-T04_good_140.810
SRR6049662Rhizomagastrodiae_C368-T01_good_159.510
SRR6049663Rhizomagastrodiae_C368-T01_good_156.210
SRR6049664Rhizomagastrodiae_C368-T10_good_162.050
SRR6049665Rhizomagastrodiae_C368-T10_good_162.050
SRP279888GastroGastrodia elata tuber 59.59
JuvenJuvenile tuber39.92
Mother_GastroMother tuber of Gastrodia elata 50.85
Mother_JuvenMother tuber of Juvenile 36.01