Detail information of GWHGAAEX000800/evm.TU.scaffold_100.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672128944|ref|XP_008787969.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g37170 [Phoenix dactylifera] |
| Swissprot | tr|O23169|PP353_ARATH | 0 | Pentatricopeptide repeat-containing protein At4g37170 |
| trEMBL | tr|M5W6D2|M5W6D2_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ04813.1} |
| TAIR | AT4G37170 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000099 | 1812323 | 1862632 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000800
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 76 | 102 | 4.30E-05 |
| PF01535.19 | PPR | 105 | 127 | 0.0007 |
| PF01535.19 | PPR | 135 | 163 | 0.00015 |
| PF13041.5 | PPR_2 | 236 | 282 | 1.10E-09 |
| PF01535.19 | PPR | 311 | 334 | 0.73 |
| PF13041.5 | PPR_2 | 336 | 384 | 1.10E-08 |
| PF01535.19 | PPR | 412 | 436 | 1.2 |
| PF01535.19 | PPR | 477 | 505 | 0.027 |
| PF14432.5 | DYW_deaminase | 510 | 593 | 3.00E-19 |
| PF00332.17 | Glyco_hydro_17 | 604 | 922 | 4.20E-86 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.900 |
| SRR2545915 | Juvenile tuber | 2.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.780 |
| SRR5643514 | five period of Gastrodia elata | 3.190 | |
| SRR5643515 | five period of Gastrodia elata | 3.160 | |
| SRR5643524 | five period of Gastrodia elata | 2.580 | |
| SRR5643525 | five period of Gastrodia elata | 1.100 | |
| SRR5643528 | five period of Gastrodia elata | 0.610 | |
| SRR5643658 | five period of Gastrodia elata | 0.790 | |
| SRR5643659 | five period of Gastrodia elata | 1.280 | |
| SRR5643660 | five period of Gastrodia elata | 1.050 | |
| SRR5643661 | five period of Gastrodia elata | 2.270 | |
| SRR5643662 | five period of Gastrodia elata | 2.080 | |
| SRR5643663 | five period of Gastrodia elata | 1.520 | |
| SRR5643664 | five period of Gastrodia elata | 1.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.820 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.820 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.28 |
| Juven | Juvenile tuber | 6.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.03 | |
| Mother_Juven | Mother tuber of Juvenile | 1.85 |