Gene detail

Detail information of GWHGAAEX000801/evm.TU.scaffold_100.63

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|507524157\|ref\|YP_008045770.1\|	phosphoenolpyruvate carboxylase [Spiribacter salinus M19-40]
nr	gi\|27657589\|emb\|CAC83482.1\|	phosphoenolpyruvate carboxylase [Phalaenopsis amabilis]
Swissprot	tr\|P29193\|CAPP1_SACHY	Phosphoenolpyruvate carboxylase, housekeeping isozyme
trEMBL	tr\|Q84VT4\|Q84VT4_PHAAB	Phosphoenolpyruvate carboxylase {ECO:0000313\|EMBL:CAC83482.1} (Fragment)
TAIR	AT1G53310	phosphoenolpyruvate carboxylase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000099	1863373	1892615	-

Transcript Sequence
>GWHTAAEX000801 CGTCAAACGAATAACAAAACGAAGGCCTTTTTCTCTATAAAAAAGTATAAATACGCCTTCCACATCGAGATTCCTTGTACCTACAAAACTGGGAGTTGCTTTAGCTTCCCATCGTTTTCTTCTAGGAATCTGTAGACTTCAAATCTAGGGTTTTGGGAGCAACCTAAAAGCCATTTCATTTTTTTTCCTCCGCGACGAAACACTTGGAAAGTCGCTCTACCCGCAGTGATCTGAGATTTGAGAGTGGAAGAGACAGGAAAGGAGATGTCCAGGAGCACGCCTGAGAGGCACGCGTCAATAGATGCACAGCTAAGGCTACTGGCACCTCGAAAGTTATCTGAAGATGACAAGCTGGTAGAGTACGACGCCTTGCTACTGGATCGCTTCCTTGACATCCTTCAGGAGTTGCACGGTGAAGATCTTAGAGAGACGGTTCAAGAGTGCTATGAGCTTTCTGCTGAGTATGAGGGCAAGCTTGATGCCAAGAAGCTAGAAGAGCTTGGGCGTGTGCTGACGAGTTTGGATCCTGGGGATTCCATTGTTGTTGCCAAGTCCTTTTCGCACATGCTTAGTCTTGCCAATTTGGCTGAGGAAGTTCAGATTGCCTATCGCAGGAGAAATAAGTTTAAAAAGGGAGACTTTGGTGATGAAAATTCTGCAACTACGGAGTCAGATATTGAAGAGACTCTCAAGAGGCTTGTGCATGAGCTGAAGAAGTCCCCTGAGGAAGTTTTTGATGCTTTGAAGAACCAAACTGTCGATCTGGTTTTAACTGCACATCCAACTCAATCGGTGAGGAGATCCTTGCTTCAGAAACATGCCAGGATAAGGAATTGTTTGGCTCAATTGAATGCTAAGGATATCACTCCTGATGACAAACAGGAACTAGATGAAGCTCTTCAGAGGGAGATACAAGCTGCTTTTAGGACAGATGAAATCCGCAGAACTCCTCCAACTCCTCAAGATGAAATGAGGGCAGGAATGAGTTACTTTCATGAAACTATATGGAAGGGTGTCCCGAAGTTTCTACGTCGTGTTGACACAGCTTTGAAAAATATTGGAATTAATGAGCGTGTTCCTTATAATGCTCCTCTTATTCAGTTCTCTTCATGGATGGGTGGTGATCGTGATGGAAATCCTAGAGTTACTCCAGAAGTCACAAGGGATGTGTGCTTGTTGGCAAGAATGATGGCTGCAAATTTGTACTTCTCCAAGATAGAAGATTTAATGTTCGAGTTATCGATGTGGCGTTGCAGTGATGAACTTAGAGTTCGAGCAGATGAACTACACCTCTCATCAAAGAAAGATGCAAAACATTATATAGAGTTCTGGAAAAAAGTTCCTCCGAATGAACCGTATCGTGTTGTACTTGCTGATGTTAGGGATAAGCTGTACAATACACGAGAGCGTTCTCGGCATCTTTTGCCAAGTGGACACTCCGACATTCCTGAGGAGGCCACTTTCACCAATGTTGAGCAGTTCCTTGAGCCTCTTGAGCTCTGTTATAGATCTCTCTGCACCTGTGGTGATAGACCTATTGCCGATGGAAGCCTTCTCGACTTCATGCGGCAAGTGTCAACCTTTGGGCTCTCTTTAGTGAGACTGGATATCAGGCAAGAATCTGATAGGCACATTGATGTTATCGATGCCATTACCAAATATCTTGGGATAGGCTCGTATCGAGAATGGTCAGAGGAGCAGCGTCAGGAGTGGCTTCTATCTGAACTGAGTGGCAAACGCCCTTTATTTGGCTTCGACCTTCCCAAAACTGAAGAAATTGCGGACGTTCTTGATACATTCCATGTTATAGCTGAGCTTCCGTCTGATAGTTTTGGAGCTTACATAATCTCCATGGCAACTGCTCCATCTGATGTGCTGGCAGTGGAGCTTTTGCAGCGTGAGTGCAGGGTGAAGAAACCACTGAGAGTTGTACCACTTTTTGAAAAGCTTGCCGATCTCGAGGCAGCGCCTGCTGCTTTAGCCCGCCTTTTCTCAATCAATTGGTACAGGAACAGAATTGATGGAAAGCAGGAGGTTATGATTGGTTATTCAGATTCTGGGAAGGATGCTGGACGTCTTTCTGCAGCTTGGCAGTTGTATAAAGCTCAAGAAGATTTAATTAAGGTTGCCAAACAGTTTGGGGTGAAACTGACAATGTTCCATGGACGAGGGGGAACTGTTGGAAGGGGAGGTGGCCCTACCCATCTCGCTATTTTATCTCAGCCTCCGGATACAATTCATGGTTCACTCCGAGTCACTGTCCAGGGTGAAGTAATTGAGCAATCTTTTGGAGAGGAGCATCTGTGTTTCAGAACTCTTCAACGTTTTACTGCTGCTACCCTTGAGCATGGCATGCATCCACCAATTTCACCTAAGCCGGAATGGCGAGCATTGTTAGATGAGATGGCTGTTGTTGCCACAAAGGAATATCGATCAATTGTCTTCCAAGAACCTCGTTTTGTTGAATACTTTCGACTGGCAACCCCCGAGCTGGAATATGGCAGAATGAACATTGGAAGCCGACCACCTAAACGAAAACCCAGTGGGGGGATCGAATCCCTGCGAGCAATTCCTTGGATTTTTGCATGGACTCAAACTAGGTTCCATCTTCCCGTGTGGCTTGGTTTTGGAACAGCATTCAAGCATGCCATTGAAAAGGACATAAAAAATCTCCACATGCTGCAAGAGATGTATAATGAATGGCCCTTCTTTAGGGTGACCATTGACTTGGTTGAGATGGTATTTGCAAAAGGGGACCCTGGCATTGCTGCATTGTATGACAAACTGTTGGTTTCAGATGATTTGTGGTCATTTGGGGTGAGGCTCAGAGCTAACTATGAAGAAACCAAATTTCTTCTTCTTCAGGTTGCTGGACACAAAGATCTTCTCGAGGGAGATCCCTACTTGAAGCAGAGATTGCGCATCCGCGACTCTTACATCACCACTCTGAATGTGTGCCAAGCTTGCACCCTGAAAAGAATCAGAGACCCCAATTTTCACGTGAATGTGAGGCCCCACATATCCAAAGAAATAATGGACTCTAACAAGCCCGCCGCAGAGCTTGTGAAGCTCAACCCCACAAGCGAGTATGCTCCTGGCCTTGAAGATACCCTCATCCTCACCATGAAGGGCATTGCTGCCGGCATGCAGAACACTGGATAAACAAACCATCATCATGCATATGGCCGGACAATTATGTTATATCTTCCTCTCCACCATTTTCATTTTTGCATTTTTACAAGTATCCTTCTTCCCCCAATTAATCAGGCGCTTTTTCAGCATCTTTTAAACTACAAGTGAAAGTGGCCAAGTTGAATTTTGCTGCCCAAACTATTTGTTGGTGGCGGCTGTTTTCTACATGCAGTATCCTGCAATGCTTTCTATGCTGTAATGATTATGTTGCTCTATCTTTTCTCTACTTATAATTCAGTAATCATAAGGGCAGTGCCAACTTGTGATTGATGTTGTAATTCAGTGGTTCAACTTTTGGTTCAGTTTTTGACAAGTTAAGCGTTCAAATATTAAGTACAACTGTTGAGATGTGATGTCGCATCGATGACAAAAAGTTGTGCATGTTGAACTGTTAAATAATTAAGTTGAGCTAGCTGAACACTGTGATGTTTGAACAACATTTCTCAATATGTTAAAGGTAGGCTTATTGGTAGAGGATGTAAGAAAGTTAGCTTGATCCATTATAGAATTTGCA

Network for GWHGAAEX000801

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00311.16	PEPcase	163	965	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01595	ppc	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710
		Carbon fixation pathways in prokaryotes	map00720
		Methane metabolism	map00680

Gene Ontology

GO term	Ontology	Name
GO:0006099	Biological Process	tricarboxylic acid cycle
GO:0015977	Biological Process	carbon fixation
GO:0008964	Molecular Function	phosphoenolpyruvate carboxylase activity
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.950
SRP064423	SRR2545915	Juvenile tuber	70.030
SRP108465	SRR5643513	five period of Gastrodia elata	43.190
	SRR5643514	five period of Gastrodia elata	59.760
	SRR5643515	five period of Gastrodia elata	46.700
	SRR5643524	five period of Gastrodia elata	69.370
	SRR5643525	five period of Gastrodia elata	113.790
	SRR5643528	five period of Gastrodia elata	173.380
	SRR5643658	five period of Gastrodia elata	123.210
	SRR5643659	five period of Gastrodia elata	52.590
	SRR5643660	five period of Gastrodia elata	46.250
	SRR5643661	five period of Gastrodia elata	55.840
	SRR5643662	five period of Gastrodia elata	59.550
	SRR5643663	five period of Gastrodia elata	57.270
	SRR5643664	five period of Gastrodia elata	42.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.680
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	26.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	81.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.760
SRP279888	Gastro	Gastrodia elata tuber	32.09
	Juven	Juvenile tuber	35.80
	Mother_Gastro	Mother tuber of Gastrodia elata	68.78
	Mother_Juven	Mother tuber of Juvenile	42.86