Gene detail

Detail information of GWHGAAEX000805/evm.TU.scaffold_100.69

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|336176705\|ref\|YP_004582080.1\|	3.00E-52	1-aminocyclopropane-1-carboxylate deaminase [Frankia symbiont of Datisca glomerata]
KOG	KOG0256	0	1-aminocyclopropane-1-carboxylate synthase, and related proteins
nr	gi\|5596990\|emb\|CAB01401.1\|	0	1-aminocyclopropane-carboxylate synthase homologue [Phalaenopsis hybrid cultivar]
Swissprot	tr\|Q9STR4\|1A17_ARATH	0	1-aminocyclopropane-1-carboxylate synthase 7
trEMBL	tr\|Q9XGG3\|Q9XGG3_9ASPA	0	1-aminocyclopropane-carboxylate synthase homologue {ECO:0000313\|EMBL:CAB01401.1}
TAIR	AT4G26200	0	1-amino-cyclopropane-1-carboxylate synthase 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000099	2074614	2077569	+

Transcript Sequence
>GWHTAAEX000805 AACACTTCACTCGCGCACAACTTTTCCTTCTGCTTCCTTTTAGGCCTCAGTTCCAGAGAGAGCGACAAAGAAAGCTCTATATATATATATATACCAATAAACATGGTGAGAGGGGTGGTAGGGTTCGGACCTCCATTGTCAAAGATTGCAGTGTCAAAGGCTCATGGGGAGGATTCCCCTTACTTTGCGGGCTGGAAAGCTTATGACGAAAACCCTTACGATGCAGCTAGCAATCCCTTAGGAGTCATTCAGATGGGATTGGCTGAGAATCAAGTCTCATTTGATTTGCTGGAGGATTATCTTGAGCATCACCCTGAGATTTCTAGCTGGGGATCTTCAGGGATCTCTGGCTTCAAGGAAAATGCTTTGTTCCAGGATTACTGTGGCCTACCAACTTTCAGAAAGGCAATGGCAAGTTTCATGGAGGAAATACGGGGAAAACGGGTAAGATTCGACCCAGAGCGAATCGTGCTGAGCGCCGGCGCTACGGCAGCGAACGAGCTTCTGACCTTCATATTAGCAGACCCGGGCGACGCCTTCCTGGTCCCCACTCCTTTCTACCCCGGGTATCCTCACCGACCCGGTGACAGCAACACCGACCCCCTTCGCCTTCCTCCTAACCCGTCGTCCCCTTTTCGTGTCCGCAGGTTCATCCGCGACATCCAATGGAGAACAGGTGCCCGAATGGTGCCCGTCCCCTGCCACAGCTCCGACGCCTTCCAGCTCACCGTCGACTCCCTCCAAGCGGCGTATTCCCGCGCCAAAGCCTGCAGCCTTCGTGTCAAAGCCCTACTCATAACCAACCCGTCCAATCCGCTTGGCACCACCATCCCCCGCCCCCTCCTGGAAGACATCCTCGACTTCGTCGCCTCCAAAAGCATCCATCTAATCTCCGACGAAATCTACTCCGGATCGGTCTTCTCCTCTTCAGAGGATTTCTTGAGCGTCGCCGAATTAGTGGAGTTAAGAGGAGGAGGACAGAACTTTCCCGGGGTTCACATCGTGTACAGCCTGTCCAAAGATTTAGGGCTTCCGGGCTTCAGGGTCGGAGCCATCTACTCGTACAATGACGGCGTGGTGGCGACAGCCAGAAGAATGTCCAGCTTCAGCTTGGTCTCGTCGCAGACGCAGATGCTGCTGGCCTCCATGCTCTCGGACGAGGACTTCACGTCTAGGTATGTGAGGATAAACAAGGAGAGGCTGGAAAGGAGGCGGGCGCGCATTGTTGGGGGGCTGAAGGACGCGGGGATTGAGTGCTTGGAGGGCAACGCGGGGCTGTTCTGCTGGATGAATTTGGCGCCTCTTCTTGATGAGAGGTCTGTGGAAGGGGAGCTGAGGCTGTGGAGGATGATGCTGAGTGAAGCGAAGCTCAATGTGTCGCCCGGGAGCTCGTGCTGCTGCGCGGAGGCGGGCTGGTTCAGGGTTTGCTTCGCGAATATGAGCGAGCAGACCCTCGATGTTGCGCTCGCGAGAATCAAGGCTTTTGCTGATGAGGTTAGGAAAAGGAACAAGATCATCTCCTGAATTGCTCACTTTTTATTCGATTTCGATTTGTGTGAGGCATTCTCTCTTATCAGCTCTCTTACTTTTGAAAACATGGACCCAACAGAAAGAAAAGCTTTTGCTTGCAGCTTCTTCTGCCAGCAAACCAAGAGAAACAGGAAAACAAGTCTCCTTCCAGTCGAGAAAAGCTTACGGTCCATATCATTCTTTAAGCATATGTGGCAATAGAGGTGCGGCAAGAATTTGCTGCTTAAAACCTATGTTTGTTACCAGCATACTATTGATAAGAAGAGCCACCTCTCTATGATGTGCATTTCGCATCCAGATAGATGTGTTGTACGATATATATACTAAATAATGGAGAGCTTACAGCTGACAAGAAGGTTGCTAGGCTTGGTTAAACCGAGAGCCCTTTTGAATGCAGCAGTGGTCTCAAGTGTTTTTCCTAAAAAGAACCTGCATTTTCTCAAGCTAAGAACCATACATATAAAATGAATGACTTTGGTCCCATGTAAACTTCTAAACCAATGAATCAAAAGTGGCCAGATAAAGTGCTTAGGAAGTTCAAGATGACCAACTATTAGTAAACACTTCTTAGTCCAACCATCGGTCCATCTTCGATTTTATCAGCATTGGTAAGACTTGTAAAACAAAGGCAATCTAAAATAGTTGCAAGGCAACTATTTGGGGATAACACGAGCAAACTCCGGCTAGTTGTTAATAGAATCAGAAAAGATGGAAGTGTGACGACCCAGTATTCGGGTTAGC

Network for GWHGAAEX000805

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.20	Aminotran_1_2	49	157	6.70E-18
PF00155.20	Aminotran_1_2	183	458	1.40E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01762	ACS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0009058	Biological Process	biosynthetic process
GO:0003824	Molecular Function	catalytic activity
GO:0030170	Molecular Function	pyridoxal phosphate binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.430
SRP064423	SRR2545915	Juvenile tuber	1.730
SRP108465	SRR5643513	five period of Gastrodia elata	5.400
	SRR5643514	five period of Gastrodia elata	5.300
	SRR5643515	five period of Gastrodia elata	5.390
	SRR5643524	five period of Gastrodia elata	2.700
	SRR5643525	five period of Gastrodia elata	0.070
	SRR5643528	five period of Gastrodia elata	0.140
	SRR5643658	five period of Gastrodia elata	0.100
	SRR5643659	five period of Gastrodia elata	3.420
	SRR5643660	five period of Gastrodia elata	2.650
	SRR5643661	five period of Gastrodia elata	6.080
	SRR5643662	five period of Gastrodia elata	2.060
	SRR5643663	five period of Gastrodia elata	5.340
	SRR5643664	five period of Gastrodia elata	1.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.370
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.370
SRP279888	Gastro	Gastrodia elata tuber	3.12
	Juven	Juvenile tuber	14.78
	Mother_Gastro	Mother tuber of Gastrodia elata	1.43
	Mother_Juven	Mother tuber of Juvenile	2.42