Gene detail

Detail information of GWHGAAEX000806/evm.TU.scaffold_100.70

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|42524005\|ref\|NP_969385.1\|	5.00E-150	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
KOG	KOG0054	0	Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nr	gi\|672142275\|ref\|XP_008794995.1\|	0	PREDICTED: ABC transporter C family member 10-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LYS2\|AB10C_ARATH	0	ABC transporter C family member 10
trEMBL	tr\|K3XUS9\|K3XUS9_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si005686m}
TAIR	AT3G59140	0	multidrug resistance-associated protein 14

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000099	2081057	2131712	-

Transcript Sequence
>GWHTAAEX000806 ATGGTTGCCTTTATGGGTACTGTCCTGGCCGTCTTTGAAGAATTTACTTGCTTGAAAGGTGGTGATGCTTGTGGTCCTATTGGAATCCTTTGCTCATCGAGTTGCTCTAACCAGTTTCTTTCCATATTTAGCAATTTACTTTTTTGTCTTTCATTTTTGCTCAACTTTGGTGTTAAGATATTGGCAAGAAGGGTTGGGCAACTACCTCTATTTTCTTCTTCTTCTTCTTCTCTTTTCATTATAATCACTGCAGTTGTCAATGGAAGCTTGGCAATGGTTCACATAGGCATTAGTATATGGATGCTGGAAGAGAAACTTAGAGGGGGTATAGGATTTTCATCATCCGCTTCATGGCAGGTGCTCCTATCTCACGGATTGGTATTGGTAATTGTTACCTTAGTGACAAGTATGAATAAAAGACTGATTGGAGCCTCCTTTGCTATAATTTGGTCGGCGGCCTTAACCTTGTTTGCTCTATTCTTTTGTATTTCCTCGGTTCTTGATTTCATTGTCAAAAGGGAGCTACAAATCATGCTATTCCTCGATAGCTTCTTTTTATTGGGGGCAGCTCTTTTGCTTTTGATTGTCTTCAAAAGCTCAAACACTTTAGACGGATCAAAAAGCAGTGATAGCACTTTGTATGAAGCTTTGGACAGTGAATTTAATGACAACATATTTGACTCAGATGATTTTGTTACTCCTTTAGCAAAAGCTGGGCTTTTTAGCAAAATAACTTTTCGTTGGCTGAATCCTTTAATGAAGAAAGGTTATCAGAAGCCGCTGGATGAACAAGACATCCCACATTTGACCGAGGAGGATCGAGCAGAGAGCTGCTATTTCTTGTTTATGGAACATCTGAACAAGCAAAAACAGAAGCATGCTTCACCATCGTTTCTATGGGCAATATTTTGTTGTCATTCAAATCAAATTTTAGTTTCAGGTTTTTTTGCATTTCTCAAGGTAATCACAGTTTCCTCCGGTCCAATACTCCTCAAGTCTTTCATCAACGTGTCACAAGGGGGTGGTACTTTCAGATATGAGGGATTTGTCTTGGCCATTGCAATGTATTTGGCAAAAGCCTTAGAGTCGATTTCACAGAGGCTGTCGGTTTTCCTTAGTAGAAGGATAGGGTTGCAGGTAAGGTCTTTGCTATCAGCAGCCATATATCAAAAGCAACTTTGTCTGTCGAACCATGCAAAATTGGCTCACTCTTCTGGCGAGATAATGAACTACTTGACTGTTGATGCTTACAGAATAGGAGAATTATCAAACTCGCTTCATCAAACGTGGTCAACATGTTTGCAGATCTGCATTGCGTTGACAATTATGTATGATGCCGTGGGCCTTGCGACAATAGCTGCAATGGGTGTGATCATTCTCGCTGTGATCTGCAATACTCCTTTAGCCAAGCTACAACATAAGTTTCAGACAAAGCTGTTGGAATCTCAGGATAAAAGACTGAAAGCTGTGTCTGAAGCTCTAGTGAACATGAAAGTGCTGAAACTTTATGCATGGGAAACACATTTTCAGAAGGTTATAGAGAGCCTGAGAGAGGTTGAGTACAAGTGGCTGAAAGCTTTCCAACTCCGGAGAGGATACAATAGCTTCCTATTTTGGTCATCTCCTGTGCTTGTGTCCGCTGCTACATTCTCAACTTGCTATCTCCTTAGTATTCCTCTTAATGCAGGTAATGTGTTCACTTTTGTGGCCACATTACGCATTGTTCAGGCCCCCATTAGACAAATACCTGATGTTATAGGAGTTTTCATACAAGCCAAGGTTTCATTTGCGCGAATTATTAAATTTCTTCATGCACCTGAGCTTCAGATAGCACGTGTTAGAAGAAATATCAGCGTTGACTGCAAGGATCCTGTTATAATCAAAGCAGCTAGCTTTTCCTGGGATGAGCATTACTGCAAACCTACATTAAGTGATATAAACCTTCAGATCTCTGCTGGAGAAAAGGTTGGAATATGTGGTGAAGTTGGGTCAGGGAAATCAACACTTTTGGCAGCAGTTCTTGGAGAAATTCCTAATACCAAGGGCCTTGTTCGAATTTGTGGAAAGATTGCATATGTTTCTCAAAATGCATGGATTCAGTCAGGTTCAATACGAGAGAATATTTTATTTGGTTTACCTATGGAAGAGAAAAAGTACCATGATACACTACAAAAGTGTTCGTTGTTAAAGGATATACAAATGCTGGCCTTTGGGGATTTAACTGAGATTGGAGAACGTGGGGTCAATCTCAGTGGTGGCCAGAAACAACGTGTTCAGCTTGCTCGTGCGCTATATCAGGATGCAGATATATATCTTCTTGATGATCCTTTTAGTGCTGTTGATGCTCATACTGCAAGCAGTCTATTCAATGAATATGTCTTGTGCGGCCTCTCTACTAAGACTGTTTTGTTGGTAACTCACCAAGTAGATTTTCTTCCTGTTCTCGACTCAGTTGTGCTAATGGCAGATGGGAAAATTTTGTGCACTTCTCATTATCTTGAGTTGCTTGCCTCAAGCAAAGAATTTCAGAATCTTGTTAATGCGCACAAAGACACTGTTGGTTCTGAAAGGCTTGACCAACTTGTCCCAGGAAAAAGGAAAAAAACATCAAGAAGAGAAATCAGCAGTGATGTCAGCACTAAATCGCCCAAGTTAGGAAAGTGTGCTGAAGTAGATGAGCTGATTAAGAAAGAAGAAAGAGAGATAGGAGACACCAGGCTAAAGCCGTATATACAGTACTTAACTCAAAACAAAGGTTTCTTGTATTTCTCACTTGCAGCACTCTCTCATGGCTTATTTGCGGGTGGCCAGGTTTTACAAAACTCATGGATGGCTTCTAATGTAGACAAATCTGAAGTGAGCTTGTCGAAATTGATTGCAGTGTACCTGGCAATTGGGTTTGGTACAATGTTCTTTTTGCTGCTTAGAGCCATACTTACAGTTGTTCTGGGCATTGTGACATCAAGATCTCTTTTTGCTCAGCTGATCAAGTCAGTGTTTCGTGCGCCAATGTCATTCTTTGATTCGACGCCTCTGGGAAGGATATTGACTCGGGCATCTTCTGACCTGAATATTATTGATCTAGATGTGCCTATAGCCTTGGTCTTTAGCGTAAATGCAACAGTCAATGCTTACAGCAACCTTGGTGTACTTTCTTTTGTTACTTGGCAAGTTTCTTTCGTCTCCATAGCTTTGGTCTACTTCTCCCTCTGGTTGCAGAGATACTATCTGGCTTCTGCAAGGAATTTGATGCGGCTGAATGGAACTACAAAGTCCATGGTCGTAAGCCATTTAGCTGAATCCTTAGCAGGAGCAACTACAATAAGAGCTTTTGGTGAGGAGCGCAGATTCTTTGCTAAGAATTTGAAGCTTATTAACAACAATGCCAGTCCGTATTTCCATAACATTGCAGCTAGTGAATGGTTGATTCTGCGTTTGGAAACCATGAGTGCTGCTATTTTGTTTTCGTCTGCTCTTGCAATGGCACTACTTCCTCCTGGAGCTTTCAGCCCAGGGTTTATTGGAATGGCATTATCCTATGGTCTATCTTTAAACCTGTCTCTAGTTGCCTCTATACAGAAACAGTGCGAACTTGCAAACTACATTATCTCGGTAGAAAGATTAAACCAGTACATGCACATCCCAAGTGAGGCTCCTGAAGTCATTGAAAGCAACAGACCTTCTCCCAGTTGGCCAGCTGTAGGAACAGTGGAGCTCCATGATCTTCAGGTTAGATACAGGCCAGACGCACCTCTTGTTCTTCAGGGGATCAGCTGTACATTTAAAGGAGGGCATAAAATTGGAATAGTAGGCAAGACTGGAAGTGGTAAGACCACTCTGATTGGAGCATTATTTCGACTTGTTGAGCTGACCGGAGGAAGAATAACTGTAGATGGAGTTGATATCTCCACAATCGGCCTTCATGATTTGAGATCGCGTTTTGGTATCATTCCTCAGGACCCAGCCCTTTTTAATGGGTCTGTCCGGTACAATCTTGATCCCTTGGGACAGTGTACTGACCAGCAGATATGGCAGGTTCTTGATAAGTGTCAGCTTCGAGGAGCTGTTGAAGAGAAAGAAGGGGGGCTGGATTCTCTTGTGGTTGAAGATGGATCAAACTGGAGTATGGGCCAGCGACAACTGTTCTGCTTGGGTCGAGCGCTCCTGAAGAGAAGCCGTTTATTGTTTCTCGACGAGGCCACCGCGTCCATTGACAATGCAACAGACGCCATTCTTCAGAAGACCATAAGCACAGAATTTGAAGGCTGCACCATCATTGCTGTTGCGCATAGAATCCCCACTGTTATGGATTCTACAATGGTTCTAGCAATTAGCGACGGGAAACTTATGGAATATGACGAACCTATGAAACTCATAAAAACAGAAGGGTCTTTGTTTGGGGAGCTTGTAAAGGAGTACTGGTCTCAGTCTGCAAGTTCAAGTACGTGA

Network for GWHGAAEX000806

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	311	578	1.40E-23
PF00005.26	ABC_tran	643	777	1.40E-22
PF00664.22	ABC_membrane	921	1172	9.90E-26
PF00005.26	ABC_tran	1254	1402	1.90E-27

Protein Sequence

>GWHPAAEX000806
MVAFMGTVLAVFEEFTCLKGGDACGPIGILCSSSCSNQFLSIFSNLLFCLSFLLNFGVKILARRVGQLPLFSSSSSSLFIIITAVVNGSLAMVHIGISIWMLEEKLRGGIGFSSSASWQVLLSHGLVLVIVTLVTSMNKRLIGASFAIIWSAALTLFALFFCISSVLDFIVKRELQIMLFLDSFFLLGAALLLLIVFKSSNTLDGSKSSDSTLYEALDSEFNDNIFDSDDFVTPLAKAGLFSKITFRWLNPLMKKGYQKPLDEQDIPHLTEEDRAESCYFLFMEHLNKQKQKHASPSFLWAIFCCHSNQILVSGFFAFLKVITVSSGPILLKSFINVSQGGGTFRYEGFVLAIAMYLAKALESISQRLSVFLSRRIGLQVRSLLSAAIYQKQLCLSNHAKLAHSSGEIMNYLTVDAYRIGELSNSLHQTWSTCLQICIALTIMYDAVGLATIAAMGVIILAVICNTPLAKLQHKFQTKLLESQDKRLKAVSEALVNMKVLKLYAWETHFQKVIESLREVEYKWLKAFQLRRGYNSFLFWSSPVLVSAATFSTCYLLSIPLNAGNVFTFVATLRIVQAPIRQIPDVIGVFIQAKVSFARIIKFLHAPELQIARVRRNISVDCKDPVIIKAASFSWDEHYCKPTLSDINLQISAGEKVGICGEVGSGKSTLLAAVLGEIPNTKGLVRICGKIAYVSQNAWIQSGSIRENILFGLPMEEKKYHDTLQKCSLLKDIQMLAFGDLTEIGERGVNLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTASSLFNEYVLCGLSTKTVLLVTHQVDFLPVLDSVVLMADGKILCTSHYLELLASSKEFQNLVNAHKDTVGSERLDQLVPGKRKKTSRREISSDVSTKSPKLGKCAEVDELIKKEEREIGDTRLKPYIQYLTQNKGFLYFSLAALSHGLFAGGQVLQNSWMASNVDKSEVSLSKLIAVYLAIGFGTMFFLLLRAILTVVLGIVTSRSLFAQLIKSVFRAPMSFFDSTPLGRILTRASSDLNIIDLDVPIALVFSVNATVNAYSNLGVLSFVTWQVSFVSIALVYFSLWLQRYYLASARNLMRLNGTTKSMVVSHLAESLAGATTIRAFGEERRFFAKNLKLINNNASPYFHNIAASEWLILRLETMSAAILFSSALAMALLPPGAFSPGFIGMALSYGLSLNLSLVASIQKQCELANYIISVERLNQYMHIPSEAPEVIESNRPSPSWPAVGTVELHDLQVRYRPDAPLVLQGISCTFKGGHKIGIVGKTGSGKTTLIGALFRLVELTGGRITVDGVDISTIGLHDLRSRFGIIPQDPALFNGSVRYNLDPLGQCTDQQIWQVLDKCQLRGAVEEKEGGLDSLVVEDGSNWSMGQRQLFCLGRALLKRSRLLFLDEATASIDNATDAILQKTISTEFEGCTIIAVAHRIPTVMDSTMVLAISDGKLMEYDEPMKLIKTEGSLFGELVKEYWSQSASSST

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05666	ABCC2	ABC transporters	map02010
K05666	ABCC2	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.470
SRP064423	SRR2545915	Juvenile tuber	19.610
SRP108465	SRR5643513	five period of Gastrodia elata	77.460
	SRR5643514	five period of Gastrodia elata	47.750
	SRR5643515	five period of Gastrodia elata	38.240
	SRR5643524	five period of Gastrodia elata	25.140
	SRR5643525	five period of Gastrodia elata	4.350
	SRR5643528	five period of Gastrodia elata	2.540
	SRR5643658	five period of Gastrodia elata	4.030
	SRR5643659	five period of Gastrodia elata	11.280
	SRR5643660	five period of Gastrodia elata	6.510
	SRR5643661	five period of Gastrodia elata	8.050
	SRR5643662	five period of Gastrodia elata	5.080
	SRR5643663	five period of Gastrodia elata	5.760
	SRR5643664	five period of Gastrodia elata	5.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	60.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	96.490
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	74.170
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	58.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	89.730
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	80.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	71.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	74.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	70.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	70.320
SRP279888	Gastro	Gastrodia elata tuber	3.52
	Juven	Juvenile tuber	20.73
	Mother_Gastro	Mother tuber of Gastrodia elata	4.16
	Mother_Juven	Mother tuber of Juvenile	7.77