Detail information of GWHGAAEX000809/evm.TU.scaffold_100.73
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332290735|ref|YP_004429344.1| | 2.00E-17 | leucine-rich repeat-containing protein [Krokinobacter sp. 4H-3-7-5] |
| nr | gi|695067248|ref|XP_009380537.1| | 0 | PREDICTED: probable inactive receptor kinase At4g23740 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SUQ3|Y4374_ARATH | 0 | Probable inactive receptor kinase At4g23740 (Precursor) |
| trEMBL | tr|M5X6E4|M5X6E4_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ21632.1} |
| TAIR | AT4G23740 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000099 | 2203740 | 2245730 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000809
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 29 | 65 | 1.60E-07 |
| PF00560.32 | LRR_1 | 143 | 165 | 0.024 |
| PF07714.16 | Pkinase_Tyr | 328 | 592 | 1.10E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.930 |
| SRR2545915 | Juvenile tuber | 6.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.410 |
| SRR5643514 | five period of Gastrodia elata | 15.830 | |
| SRR5643515 | five period of Gastrodia elata | 7.710 | |
| SRR5643524 | five period of Gastrodia elata | 14.630 | |
| SRR5643525 | five period of Gastrodia elata | 37.750 | |
| SRR5643528 | five period of Gastrodia elata | 39.280 | |
| SRR5643658 | five period of Gastrodia elata | 49.860 | |
| SRR5643659 | five period of Gastrodia elata | 6.370 | |
| SRR5643660 | five period of Gastrodia elata | 5.790 | |
| SRR5643661 | five period of Gastrodia elata | 5.190 | |
| SRR5643662 | five period of Gastrodia elata | 10.650 | |
| SRR5643663 | five period of Gastrodia elata | 8.420 | |
| SRR5643664 | five period of Gastrodia elata | 10.780 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.190 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 23.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.850 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.700 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 50.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.420 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.420 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.55 |
| Juven | Juvenile tuber | 17.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.72 | |
| Mother_Juven | Mother tuber of Juvenile | 9.74 |