Gene detail

Detail information of GWHGAAEX000812/evm.TU.scaffold_100.78

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|288942517\|ref\|YP_003444757.1\|	4.00E-23	alpha-L-glutamate ligase [Allochromatium vinosum DSM 180]
nr	gi\|743800126\|ref\|XP_010925773.1\|	0	PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Elaeis guineensis]
Swissprot	tr\|Q6I581\|GH35_ORYSJ	0	Probable indole-3-acetic acid-amido synthetase GH3.5
trEMBL	tr\|A0A061DSK9\|A0A061DSK9_THECC	0	Indole-3-acetic acid-amido synthetase GH3.5, putative isoform 1 {ECO:0000313\|EMBL:EOX95769.1}
TAIR	AT2G46370	0	Auxin-responsive GH3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000099	2441121	2445259	-

Transcript Sequence
>GWHTAAEX000812 AAAAAAAAAAAAAAAAAAATCAGAATAGCGAGGCAGATTTATCATCTTTTCGATTCGTTATCAGCTATGTTCAGTCGCTCGAAGGAGCTTTCGTTGCTTCCCATGTAGCCTTCTGAACTGCGCGTGCGTTGCATGTTGAGCAAGCGCTTTGGCAGCAAGCAGAGTATTGGAAATGTTGGAGAAGGCGAAGGGATTCGATGAAGAGCGTGTGATAGCGGAGTTTGAGGCACTAACAAAGGAGGTTGAAAAGGTTCAAATAGAGACCCTGCAGAGGATTCTCAAAGACAATGGCACAGCGGAGTACTTGCAAAATTTGGGGCTTAAAGGAAAAACGGATCCCATTAGCTTCAAGGCATGTGCTCCTTTGGTGACTCACAAGGATCTGGAGCCTTACATTCAAAGAATTGCAGATGGGGACGCCTTGCCAGTTCTCACCGGGCGACCAATAAAATCTATTTCTTTGAGTTCGGGTACAACGCAAGGGAAACCAAAATTCATTCCTTTCAACGAGGAGTTGGTGCAGTCCACAATGCAGATATACCGGACTTCTTTTGCTTTCAGGAACAGAGCGCATCCTATTGGGAATGGAAAAGCTTTACAATTTATTTACAGCAGCAAGCAGTTCAGAACGAAAGGTGGCCTTATAGCTACAACGGCTACTACAAATGTGTATCGAAGCCATCAATTCAAAAATACTATGGAAGACATGCAATCCCAATGCTGCAGTCCTGATGAAGTTATTTTCAGTCCTGACTACAATCAGTCTCTGTACTGCCACCTATTATGTGGTTTGATATTCTCCGAGGAGGTCCAGTTTGTGTTCTCCACATTTGCCCACAGCATTGTTCATGCATTTCGAACTTTCGAGAAAGTATGGGAAGAACTCTGCTGTGATATTAGAGAAGGAGTTCTGTCTAGCAGAATTACAATTCCAAGCATCCGCAGCTCAATTTCGAGGCTGCTGCGCCCAAATCCTGAGTTAGCAGACACTATTTACAATAAATGTGTTAGCCTGAGTAGTTGGTATGGTGTGATCCCAGAGCTTTGGCCTAATGCCAAATATGTCTATGGAATCATGACTGGATCGATGGAGCCTTACTTGATTAAGTTAAGACACTATGCGGGTAGCTTGCCTCTGATGAGCGCTGATTATGGATCTTCAGAAGGCTGGATTGGTGCTAATGTTAATCCCGAGGAACCACCGGAATCAGCAACTTTCACTGTTCTCCCCAACATTGGGTATTTTGAATTTATACCTCTTAAGGAGAGGCTTCATGAGCAGAAGGTAGACAAGCATGCTTCTGTGATAGAGCAAAGAGAGCCAGAGCCAATCGGACTGTCTGAAGTTTGTGTTGGCGAAGAGTATGAAGTAGTCATCACTACCTTTGCAGGCTTGTACCGCTATAGACTCAGCGATGTGGTTAAAGTAGCCGGCTTCCACAACGCAGCGCCGAGGCTCCAATTCATTCGCCGGAGGAACCTCATCCTGAGCGTGAACATTGACAAGAACACTGAAATAGACCTGCAGATGTCAGTCAAAGAGGCAAGCAAGCTGGTGGCGGCGGAGAAACTCGAGGTACTGGACTTCACGAGCCATGTGGACATGTCCACGGATCCCGGCCACTACGTCATCTACTGGGAGCTCAGCGGCGAGGCCAGGGATGAAGTCCTCGCCAACTGCTGCGACTGCTTGGATCGCTCCTTCGCCGACGCTGGCTACGTTGGCTCGCGGAGAATTCGCTCCATCGGCCCTCTGGAGCTCCGCGTCGTGAGAAACGGAACCTTCCATAAGATTCTGGACCATTACCTCGCCCTCGGTGCGGCGCTGAACCAATTCAAGACGCCCAGGTGCGTGGGCCAGTGGAACCGCAGCCTGCTGCAGATTCTCAACGGCAGTGTCTTCAAATGCATCTTCAGCACTGCCTATGACTGAAGTGTTGGCGCACTTGGTTTTTACTTCTTTTAGTTTTTAATGGTGATGGTTGAAACCCTGGTTGTCTTTTTTTGTGAATTCTGCAATCTCCAGTATTTGCGGAGCTGTAAAAAATGCTGGAATCCCTCTGTAAGTTTTCCCAAGATGTTGAAGTGATTCTATCGAAAGAGTGCATGCTTTTCTGGATTCAATGGATGCCAGCACTGCCGACGTCGACTGATGTCGAACTATTGTTTTGTCGCAATCATTGGATGCGAAGTGATCCTAAAATATTTGTTTTTCTGATCTTACAAGATTCTTAAGAAATAATTAAGTGGTTTAAAGGGGGCGAATGATGTTGGAGTGTTTTAGCTAACTCTGTTAGATTTAATTTTTGTATGTTGGATCAAGAGTTTATATTTATAATTCTATTCTTATTTTTAATTAAATTTAATTTGTTTGTATATTTTATGCTTCTGTTGTTTTTTGATTGCCTTACTTTAAGGAAAATATTTTTT

Network for GWHGAAEX000812

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03321.12	GH3	16	561	7.60E-190

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14506	JAR1_4_6	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.370
SRP064423	SRR2545915	Juvenile tuber	33.390
SRP108465	SRR5643513	five period of Gastrodia elata	51.280
	SRR5643514	five period of Gastrodia elata	75.390
	SRR5643515	five period of Gastrodia elata	66.310
	SRR5643524	five period of Gastrodia elata	61.960
	SRR5643525	five period of Gastrodia elata	172.220
	SRR5643528	five period of Gastrodia elata	165.160
	SRR5643658	five period of Gastrodia elata	199.610
	SRR5643659	five period of Gastrodia elata	60.080
	SRR5643660	five period of Gastrodia elata	54.090
	SRR5643661	five period of Gastrodia elata	49.990
	SRR5643662	five period of Gastrodia elata	76.610
	SRR5643663	five period of Gastrodia elata	60.970
	SRR5643664	five period of Gastrodia elata	97.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	59.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	73.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	58.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	60.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.380
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	75.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	79.200
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	80.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	67.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	67.770
SRP279888	Gastro	Gastrodia elata tuber	33.57
	Juven	Juvenile tuber	118.01
	Mother_Gastro	Mother tuber of Gastrodia elata	202.59
	Mother_Juven	Mother tuber of Juvenile	145.84