Gene detail

Detail information of GWHGAAEX000815/evm.TU.scaffold_100.83

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0827	3.00E-74	Predicted E3 ubiquitin ligase
nr	gi\|672148351\|ref\|XP_008797180.1\|	2.06E-140	PREDICTED: E3 ubiquitin-protein ligase TRAIP-like [Phoenix dactylifera]
Swissprot	tr\|Q9M0R4\|ATL37_ARATH	3.00E-08	Putative RING-H2 finger protein ATL37 (Precursor)
trEMBL	tr\|M0S1H3\|M0S1H3_MUSAM	5.00E-122	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P20150_001}
TAIR	AT4G01270	3.00E-74	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000099	2741426	2783417	+

Transcript Sequence
>GWHTAAEX000815 GTTTGCATGACGCATCATTGTACATATACTTTTGGGACCACTAATGATAGGGTAGTATAATACCTTCATAGTATGTATGCGCTAGGTTTCTTAGTGAGGAAATGGGTGAGTCCCATTTAGTTGATCACATACATATTAAAATAGATGTTATATTTGTTTTTACTGTTGCTAATTACATGGTCAACAATTTTACCGATATCCATTTCACATAGCAGCAATAGAATCGCCAATACAAAACAATAAAAATATTGAAGAGCCATACCCATGTAACAGCAGCATATAATCATGGAGAATAGCCTGTATAGTGTCCAAACTGAAAACCAGCAACAATTTAATCGGGAGGACTCAAGGCCTTCAGATAGCAGAAGAATAAATGGGAAGCCAAAACTAAAATAATTAAAGCCAACTCAGAATTTGTCGATCCTGATTGGATCGCAGACATAGATTTCCACGAAAGAGCAATTTGTTTTGTCCTTAATTTGCAAATTTTTAAAATTGAGCTTTTACTACTAAATTAGTTTAGAAAATTCTGAAATTTCTCTTAACAAAATTTGTTTTGGAAAATTCTGAAATTTCTCTCAGCAAAATTTGTTTGGAAAATTCTGCAATTTCTCTCTTCCCATAACGTTTGCACAATAACACAAATTGCCAAGCTGAGTAACATTTTTTCCAAAAAGCGTTGTAGCTTTTTTAATGCCATTGTCAAACAATTGAGAGAGGGGCTGTCAACCAGCCCGTATCAAAAGGAAGAAAGGTTATAAACAGTTTATAGGCAAAACAATAATTAAAGAAAAGATAGTTGTGAGTTTCATTATAAGAGTTGCATAGATTTCACATTTTATTCACAATGAGATCTCTAGAAGATACTATGTCTGCTGTTTTGAAAGATTTAATTGTGGCTTTCCAAACAAAGCATGCATACCGAAGACGTGCCCCTTAAACTAGATTTGTAACCAATCAACTGATTTCCAATTCTTATAGATAAACCATCCCTACTTTCAAAAGAGTAAAACTATTGGACCCATTCAATAAAAAGACCTTACAAGCAAAAGAGGTTATGCAAGAAACCTGAGGGAACATATTTTGAGCATCCTTATGAATTTGTTTAGGAGCACAAGACATATTACTTACAATCTGAGCTTGAAGGGTTGGAGAAGTGTTGAAGGAAGCATTCCACTGAGCAACGAGAAGGTTGGCTGATGTTATCATTTTCCAAAACATCATTTGCTTGCAATTGGAGAGAAGAGCATTGGGGAAGCACAGACCGAGCCCACCTTTAATTCATAGAGCGGTAGTATAGTTCCAAGGAAGAATTTGAAGACTTATCCATAGAACCATTAGAAAGAAATCTCATACAAGCGGGGTTAATCTTGCCAAGAACAGCTTTAGGGATATTTAAAGGCTTAAACCCGTATAAAAGTATGTTCCACACAGTGAATTTCAGGAATTGAGGTCTACCTACATAAGATAGAGAACATTGTGGCAAACCGGATAGCATATTTATCAATTATCAAGCAGCAGCTGAAATAAAACAGTTGATGTTTTGAAGCTATTATTTGGAAGGCCAAGATATTTTATTACTAGCTTTCAGCATACTAGCCAGGACATCCTTCTACTTCGCAGGTTTAGAAAAATAGATGGTAGAATTACAAGCGTTCAACGAGTTCAACGAGAAACTTGAGCAATTAAAAATTTTGTGAAGACAGTTGCCGAGAGTTTCAATATTCTCCTTTGTAGCTTCACCAAATATTAGTATATCGTACGCAAAAAGTAAATGTGAGCAGCTGAATTTATTAACTTCAATTGGGATGACGTTCTTCGTCCTGCAAGGGTTTTCAAGCATACAGAAAGTCCATTTAAGGCTATAGCAAATATACAAGGGGACAAAGGGCATCTTTGTCGAAGCCCATTAGATGAAGAGAAGAAACCTGACATGTTCCCATTTATTATAATTGTGAGATAAACATTGATTATGCACGCCTTGACCCATGAAGTGATTTTTTAGGAAAACCAAACTTGCTCATTTGTTGGAGAATATAACTTCTATTTAAAGAATCAAAAAACTTTCTGAAGATCAATTTTCAAGTAAAACCAAGCTTTTGGTGAGGAGCATTTAAGCCCATTAAGCAATAAACTTGCTAAGAGAATATTTTCCGATGCTAAACGCCTTTGAATTGAAACCTTCTTCAGCAGAATTGATGAGCTTGGGGAGGAGCAAGCTTAATCTGCTCGCTATAATTTTAGTTATCACTTTATATAGTGTATTACAAAGGGCGATAGATCTGAATCCTAAAAGTCATTGGGGTATTTATTTTTGGGAATAAAGGCTATGCCTGTATGAGAAAGTCATCTAGGTTGGGTGCCAATAATGAAGAATTTGTAGATAGCCTAAAAAAAATTGGCCCCACTATATTCCAGCAAGTTTGAAAAAAAGAAATTATTAAGACCATCTGAGTTAATTTCTGCTTCAGGAGGTAACATACATAGATTAGAAGCTTCTTCATTGGCTAGAGTAGCTAATTAAGGTCCTTCATCTTTGCAACAAACAGCTTGGGAACTAGTGTTTTTGAAAGGAGATTGCTTGAGAGTGCAAGTTTGTAGGAGCATCAAAACAGATTGTGTTTTTGTTTTGCTAAACATTCATATGAGTATAGAAACTTCAAATTATTTTCCCCTTGACTGAGCCAATGAGCTTTCGCTCTTTATTTGGCCAAAATCACATCGTTTTTTGCAGCTAAAATCAAGTTATTACTGTTTACCAAATCTGCATAGAGTTTGAGCATTTGCAGCTGATGCAATTTGATTTAAAATATTTTCTTGTTTTTCCAGAAGAATTTCAAGACGAGATCACGTTATCCCATATTTTGCTCAATTTGTAAATCAATGATGTTCCACAAGAGCTGAAAATTCCAGATGGAGGATCCAATGATTTTTGAAGCAAATCTATTTTTAAGAGCCCTTAATTTCTTGAAATAAAGAAGTAGATGGGTTTGATCAGAGGTGCTTGTGGCAGAATTTTGTAGAAAGAGTTTGGGTGGACCTGTAACCAAATTTCATTACATAAGAATTTATCAATTTTTGCAAAAATTGGTTATTGAGCTTGTTGACTGAACCAAGTGAAGTCCAGGCCAAGAGCCTTAAGATCAAGTAGCCTGGCATTATAGATGAACTTGTTAAACTAATCATATTTTGAACCTGAGCAAGTGGCATTAGCTGTTCTAATGCAGTTTAAGTTTCCAAAGACAATTCAAGGCTCCTTAATAGAACTAGCAACATTACTTAATTCTTGCCAAAGTTAAAAATGATCATTTTTAAAGTTTGATGCATAGCCAATAATGATCCAAATAGATACTGAACCCATAAAGAGCTTGCCATGAATGTATTGCTGTGGAATATACTGGGTTAAAATGGAACATATTTTTATTCCATTTTTGCCAAATCCTCCCGACTTAACATTGGTTGAAATTGTGATACTTATCTTCATAATCCAACATTTGAAATTTATGAAAAGTAAAGGAGTTCACAAGCTCATCAAGTTTGATTTTAGGCTCCAGGATGGCCATAAAATTGACCTTGTTGGTCTTCACAAAAATTCTAAGGTCATTGATTCAAATGTCAAAGAGTAAACCTCTGACATTCCAAGAGGCAATGGAGTCATAATGATAATTGAGCAAATGAGGAAAGAAGAATCCATTGGATAGGAGAGATGAAGGCTATAGACAAGGAGTTAGAGTTTCTAGATCTTCCCCTCCTTGGTTTAATAATTTTATCAACTTCATCAGTGTTGGAAGAAGTAGTCAAAGTGGTAGGAGAGTTTGGCAGTGATAAAGAGGGTGGAACAAAGGGAGAGGGAGGGAGTTGAGAGCTCTAGGAGGGGCGGCTGGAGGTGCTGAGGGGCTGCTGGAGGTGCTGTAGGGGGGGGCTGTAGGAGGGGCTGCTGGAGGTGCTGTAGGAAGGGCTGTAGGAGGGGAAGTAGGAGACTTTATACATAGTAGAAAGATAATAGGAAGGGTTGTTGGAGAGTGGTGTTCAAGTGAGAATGGAGTTGGGAACTTGCTACATCATCAATATGGATAATAAGTTAGTCTTTTGGGGGAGACGGATGAGCATATAGGTAAGGGATTAATGGAGCCGGCAAGGTCTCTTGGTTGGACTATTAAACGGGGAAAAGGATGGCAGAAGAAAGAGGCGCCTGCTGCAAATTCGGGATGACGGACAGATGGCCAGGAGAAATCCAGTGGTTTCTTTTGCCTTTTCAGATAAGACTCCTTCCTCTAACCATAATATTCAAAGCAGTAGAAGAACAACCGCAAGCTGATGGAAAAAAGAGATTTACATATCTCACATCGTTTAGCTTTCCAGTCAAAGAGAACCTGTTGAATAGATTTCTTCCCATTGAGCGCGATATCTATTGTATCTGGAAGGTCTGCTTTATTTTCTACCTCCACACATAATCTGGCGAAGGTAATCCTGGAGCGAACCGAGGTGAGGTTGTCGGCCATGAGAGGTTTTCCCACTGCGCTGACGATTTTCGATGGAGCAGCGGTGGACAGTTGAGAGAGAGATTGGAAAATTTTATTTAAAGAGGCAGAGAAGCAAAAGATGTTTGTGATGGAACAAAATCAGGTGACCATGGACTGAAAATGATGAGAGCGTTGCAAAAGAACCAAGAGCTACCTGAGAGCCCGAGAGCACATACCGTTCATCCTCAGGACATGTGAATAGGAGAAGATAGATGCCGTTTACCATTGTGAAAAGTGAGATAGATCCTGTGAGTTTCCAGAGGTTGGCCATAGCTTCGAGTAGGACTTTGTATGAGGGGAATTTCACAAAAGAACAAACGATTAGGCAGTTAGCCCAGATCTGGGAAGATTCTGCAGCATCTTCGTCAGTCATTAACACTTCAGATTCAGAGAGAGAATAGTAGGAAAGAGGGTGGAAGAAGAGGGCTTTTAGTTGAGAAAAGCGACTTCCATTTAACCGTGAGGGAGGGTTATACGGTGAGGTTGAAGGAAGAAGGCGAGGAGAGGGACAAGAGAATGGGATATGAGAGAATGATTTACCGAGGGGCGGCTGCGGCCCCGAAGGGGAAGGGGAAACCATTGAAAATGAGAGGAAACCCTAGGGTTTCGACAAGGAAATCCGGAAGCGCAGAGGTGAGTCCGGAAAGCCGAACGAGAAAAATTGGTTTGATTTACTACCCAAATTCAATAATATTAATAATATTTTACTTTATTTCATAAAAAATTATTTTAATAAAAATAAAAATATTGTTACGGACGGGAGCCCTGCCGGTCTACCCAGTGGCCCGGACCGGGATTTGGCCCAACCATATGTAAAATACTGCAAGCCGGTTCTTAGGTCTGCACTTTAGAATCCTTTCCCGCCTCGACCTTCACCAAGCTTGACATTCCCGCTAGACCGCGCCAAAATATATAAATCAATAATATTCCTGGAAACGTATAAAAAGATGAGAGCGTGGTTCCTCTGTTCTTGATAAGCCCTAATCTAATCCTCGCTCACAAATGACCGATTCGAGTTTCCCCATTGGTAACAACGGCGAGCAGAAAGCTATTTGCACTATATGCTTCGAGGACCTCAAGCCCATTCTCGAGGACCTCCAAACCCTCCCTAGTTGCGGCCATGTTTTCCACGAGCTCTGCATCCAGCAATGGCTCGAGTATTGTCCGGCTGGAAAGAAGCCAACTTGCCCTGTCTGCAAGCAGTCATGCTCCCGCGAAAACCTAACCCGCCTCTACTTTCAGTCGACTGGAGATTCTATCCAGCTATTCTCATCGTTTTCCAAGCAGGATCCGGCCAATGCTGATGCTCAAAAACTGGCTGAGGAGGTGGGGCGACTGGAAACGAAACTTGCGTCAATGACCGCCGCTAATAAGAACCTGCAGGCGCATTTCAATAAAGTGCACGAGGATCTTTTAGCTTGGAAACAGTTTGCTAAAGAAGAGCAGCTTATGATGGAGGAAATTAAGAAGGACAAGGAGAACAACGAGCAGCTCCTTTGTTTGAAAATGGAGGAGCTGTCAATGAAAACAGTAGAGTGTGCTAAGCTTCAGGATAGGACCTTGTCATTGGCAAAGGAACTTGCAACTCTCAAATTGGCAACAGATCTGAACCTAGAGGAAGAAGACATGGTGAAGCTTGCTTCTATTGGTCATGGGAGTAACTCAGAGAATGCTGCAGATGTTTTGAAAAAATCACTAGCCTTACGCAACAAGAGCTATAAGGACCTGATAATCCAGTGCAGCATTCTCGGAAGATCAGAAGCTCGTGCTTGTAAGAAGCTCGATAAGGCTAAAGAAAAGATAAATAAATTAGAAATAAGATTGCAAGAAGTGGAGAAGGCTCTTGAAGAAAAAGAAAATGAAGGTCTGAGAGATTTAAAGGCTTTCAGTAAATTGAAATCTAAACATAGCAACCTAAGTTATTTAGAGCAAAATGTTGGATTCAGTACTATGGGAAATCAAGCTGTGAATCAGTATGCAACGGATAGTTCAAATCACTTTACTTTGTCTAGCATTGAGCCTTTTGATCAATTTCAGATAACTGAAAGAACTGAACCTTACAAAATACCATCTCCAGCGGATGTGAAAAATAATTGTTCTGTTGATGTGAATGTGAACTCTTGCATCCATATAGATGCCGACATCCAGAAGCCATTTCCAGACACAAATAACAATCCAACTATTGCAATCAACTGCAAGAGTGTAGCAACTTGTCGAGATGCCCCACCTATGTTTGATGCAATATCTTCTTCTATGCAGAATACTGAAGCCCATGCTTATGCTAAGATCAATGCATGTACAGGTCATTGTAAGTTTGGGGATGATTCTAAAGACGGTGAGGAGGGCTCATCAATAATTATTAAAAGGAATGTGACTTATAATATGAACACCATATCTACAGAGAAGTTTCCTATGGATGGCATATTGAAGGAAGTGCCTTACTTTGCTGTCAAAAAGGAAACCTATGCTTGTGCCTCCCCTGTTATCTTAGGTAATTTTAGTATTTCTGGTTCTCTTGGACCTGAAAAGGTGAACAACAGAAGCACTGGGAAGTGGTGCAGGCAGATCCAGTCGAAATCATCCAGTGGGGAATTGATTTCTGTTGGTGCGGATGGGAGAGGAGGAAGGATCAAAGTGCTGAAACATCGAGAGAAATGCTTGGGTGAGTCACTGACGGCTGTTGGTTCAAAGAGGCATAAACACGGAGCACATCAAAGGAGCCAATTTAATATCGAGCATTTCTTCGAGAAGGCTCAAAGCCGTTGA

Network for GWHGAAEX000815

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	18	66	2.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.830
SRP064423	SRR2545915	Juvenile tuber	1.300
SRP108465	SRR5643513	five period of Gastrodia elata	0.980
	SRR5643514	five period of Gastrodia elata	0.900
	SRR5643515	five period of Gastrodia elata	0.830
	SRR5643524	five period of Gastrodia elata	0.860
	SRR5643525	five period of Gastrodia elata	3.320
	SRR5643528	five period of Gastrodia elata	3.970
	SRR5643658	five period of Gastrodia elata	5.220
	SRR5643659	five period of Gastrodia elata	1.160
	SRR5643660	five period of Gastrodia elata	1.480
	SRR5643661	five period of Gastrodia elata	1.220
	SRR5643662	five period of Gastrodia elata	1.570
	SRR5643663	five period of Gastrodia elata	1.780
	SRR5643664	five period of Gastrodia elata	1.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.660
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.320
SRP279888	Gastro	Gastrodia elata tuber	1.60
	Juven	Juvenile tuber	1.75
	Mother_Gastro	Mother tuber of Gastrodia elata	4.48
	Mother_Juven	Mother tuber of Juvenile	4.38