Detail information of GWHGAAEX000816/evm.TU.scaffold_100.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743800000|ref|XP_010925705.1| | 3.56E-173 | PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9ZQG9|E1314_ARATH | 4.00E-121 | Glucan endo-1,3-beta-glucosidase 14 (Precursor) |
| trEMBL | tr|D7TK88|D7TK88_VITVI | 4.00E-167 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI30910.3} |
| TAIR | AT4G18340 | 6.00E-155 | Glycosyl hydrolase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000099 | 2896936 | 2900704 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000816
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00332.17 | Glyco_hydro_17 | 25 | 341 | 9.10E-90 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.570 |
| SRR2545915 | Juvenile tuber | 0.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.580 |
| SRR5643514 | five period of Gastrodia elata | 2.950 | |
| SRR5643515 | five period of Gastrodia elata | 1.810 | |
| SRR5643524 | five period of Gastrodia elata | 1.810 | |
| SRR5643525 | five period of Gastrodia elata | 5.070 | |
| SRR5643528 | five period of Gastrodia elata | 3.430 | |
| SRR5643658 | five period of Gastrodia elata | 12.720 | |
| SRR5643659 | five period of Gastrodia elata | 0.450 | |
| SRR5643660 | five period of Gastrodia elata | 0.160 | |
| SRR5643661 | five period of Gastrodia elata | 0.440 | |
| SRR5643662 | five period of Gastrodia elata | 1.300 | |
| SRR5643663 | five period of Gastrodia elata | 0.370 | |
| SRR5643664 | five period of Gastrodia elata | 1.400 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.51 |
| Juven | Juvenile tuber | 0.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.94 | |
| Mother_Juven | Mother tuber of Juvenile | 0.26 |