Detail information of GWHGAAEX000820/evm.TU.scaffold_100.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|289549195|ref|YP_003474183.1| | 5.00E-21 | oxidoreductase FAD-binding domain-containing protein [Thermocrinis albus DSM 14484] |
| KOG | KOG0534 | 7.00E-137 | NADH-cytochrome b-5 reductase |
| nr | gi|743769240|ref|XP_010914901.1| | 0 | PREDICTED: NADH-cytochrome b5 reductase-like protein [Elaeis guineensis] |
| Swissprot | tr|P83291|NB5R2_ARATH | 6.00E-153 | NADH-cytochrome b5 reductase-like protein |
| trEMBL | tr|M0RK14|M0RK14_MUSAM | 3.00E-166 | NADH-cytochrome b5 reductase {ECO:0000256|RuleBase:RU361226} |
| TAIR | AT5G20080 | 7.00E-137 | FAD/NAD(P)-binding oxidoreductase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000099 | 3070826 | 3115617 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000820
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00970.23 | FAD_binding_6 | 78 | 180 | 6.90E-24 |
| PF00175.20 | NAD_binding_1 | 190 | 295 | 1.90E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00326 | E1.6.2.2 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 76.090 |
| SRR2545915 | Juvenile tuber | 107.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 93.730 |
| SRR5643514 | five period of Gastrodia elata | 144.640 | |
| SRR5643515 | five period of Gastrodia elata | 145.280 | |
| SRR5643524 | five period of Gastrodia elata | 181.370 | |
| SRR5643525 | five period of Gastrodia elata | 93.310 | |
| SRR5643528 | five period of Gastrodia elata | 172.480 | |
| SRR5643658 | five period of Gastrodia elata | 76.680 | |
| SRR5643659 | five period of Gastrodia elata | 98.180 | |
| SRR5643660 | five period of Gastrodia elata | 95.990 | |
| SRR5643661 | five period of Gastrodia elata | 99.790 | |
| SRR5643662 | five period of Gastrodia elata | 82.980 | |
| SRR5643663 | five period of Gastrodia elata | 76.200 | |
| SRR5643664 | five period of Gastrodia elata | 65.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 74.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 119.790 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 86.030 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 56.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 77.030 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 72.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 73.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 72.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 136.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 111.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 139.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 139.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 99.87 |
| Juven | Juvenile tuber | 65.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 268.82 | |
| Mother_Juven | Mother tuber of Juvenile | 224.18 |