Detail information of GWHGAAEX000821/evm.TU.scaffold_100.92


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|257092637|ref|YP_003166278.1|1.00E-09RNP-1 like RNA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]
KOGKOG01076.00E-26Alternative splicing factor SRp20/9G8 (RRM superfamily)
nrgi|363807806|ref|NP_001242436.1|4.45E-31uncharacterized protein LOC100776329 [Glycine max]
Swissprottr|Q6K9C3|RZP23_ORYSJ4.00E-33Serine/arginine-rich splicing factor RSZ23
trEMBLtr|I1KXH4|I1KXH4_SOYBN2.00E-31Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G39830.5}
TAIRAT1G238606.00E-26RS-containing zinc finger protein 21

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009931278433154115+
Transcript Sequence

Network for GWHGAAEX000821

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_14613.00E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12896SFRS7 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.750
SRR2545915Juvenile tuber13.620
SRP108465SRR5643513five period of Gastrodia elata8.810
SRR5643514five period of Gastrodia elata13.470
SRR5643515five period of Gastrodia elata10.430
SRR5643524five period of Gastrodia elata11.490
SRR5643525five period of Gastrodia elata16.790
SRR5643528five period of Gastrodia elata13.030
SRR5643658five period of Gastrodia elata14.170
SRR5643659five period of Gastrodia elata9.770
SRR5643660five period of Gastrodia elata9.380
SRR5643661five period of Gastrodia elata10.030
SRR5643662five period of Gastrodia elata7.880
SRR5643663five period of Gastrodia elata10.460
SRR5643664five period of Gastrodia elata8.520
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.050
SRR6049655Rhizomagastrodiae_C368-T10_good_19.640
SRR6049656Rhizomagastrodiae_C368-T07_good_110.980
SRR6049657Rhizomagastrodiae_C368-T07_good_110.070
SRR6049658Rhizomagastrodiae_C368-T04_good_110.460
SRR6049659Rhizomagastrodiae_C368-T04_good_18.490
SRR6049660Rhizomagastrodiae_C368-T01_good_18.870
SRR6049661Rhizomagastrodiae_C368-T04_good_19.780
SRR6049662Rhizomagastrodiae_C368-T01_good_113.010
SRR6049663Rhizomagastrodiae_C368-T01_good_110.390
SRR6049664Rhizomagastrodiae_C368-T10_good_112.360
SRR6049665Rhizomagastrodiae_C368-T10_good_112.360
SRP279888GastroGastrodia elata tuber 14.83
JuvenJuvenile tuber14.06
Mother_GastroMother tuber of Gastrodia elata 14.53
Mother_JuvenMother tuber of Juvenile 11.74