Detail information of GWHGAAEX000823/evm.TU.scaffold_100.94
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159042302|ref|YP_001541554.1| | 2.00E-33 | metallophosphoesterase [Caldivirga maquilingensis IC-167] |
| KOG | KOG0376 | 0 | Serine-threonine phosphatase 2A, catalytic subunit |
| nr | gi|695031940|ref|XP_009403500.1| | 0 | PREDICTED: serine/threonine-protein phosphatase 5 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q84K11|PPP5_SOLLC | 0 | Serine/threonine-protein phosphatase 5 |
| trEMBL | tr|M0T4F1|M0T4F1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P05530_001} |
| TAIR | AT2G42810 | 0 | protein phosphatase 5.2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000099 | 3166581 | 3200032 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000823
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13181.5 | TPR_8 | 51 | 81 | 0.031 |
| PF00515.27 | TPR_1 | 84 | 116 | 1.00E-09 |
| PF08321.11 | PPP5 | 123 | 216 | 1.20E-29 |
| PF00149.27 | Metallophos | 224 | 417 | 6.70E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04460 | PPP5C | MAPK signaling pathway | map04010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0016787 | Molecular Function | hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 40.310 |
| SRR2545915 | Juvenile tuber | 42.950 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.990 |
| SRR5643514 | five period of Gastrodia elata | 33.520 | |
| SRR5643515 | five period of Gastrodia elata | 27.870 | |
| SRR5643524 | five period of Gastrodia elata | 29.430 | |
| SRR5643525 | five period of Gastrodia elata | 16.220 | |
| SRR5643528 | five period of Gastrodia elata | 16.340 | |
| SRR5643658 | five period of Gastrodia elata | 14.630 | |
| SRR5643659 | five period of Gastrodia elata | 33.400 | |
| SRR5643660 | five period of Gastrodia elata | 39.110 | |
| SRR5643661 | five period of Gastrodia elata | 34.000 | |
| SRR5643662 | five period of Gastrodia elata | 33.450 | |
| SRR5643663 | five period of Gastrodia elata | 33.900 | |
| SRR5643664 | five period of Gastrodia elata | 32.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 38.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.59 |
| Juven | Juvenile tuber | 40.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 20.84 | |
| Mother_Juven | Mother tuber of Juvenile | 26.12 |