Detail information of GWHGAAEX000833/evm.TU.scaffold_100.104


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16096.00E-111Protein involved in mRNA turnover and stability
nrgi|672113148|ref|XP_008809437.1|7.34E-177PREDICTED: uncharacterized protein LOC103721143 isoform X1 [Phoenix dactylifera]
trEMBLtr|M5W2S2|M5W2S2_PRUPE1.00E-169Uncharacterized protein {ECO:0000313|EMBL:EMJ03553.1}
TAIRAT1G110206.00E-111RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009934572643502134+
Transcript Sequence

Network for GWHGAAEX000833

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.6RINGv1501971.50E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.630
SRR2545915Juvenile tuber32.540
SRP108465SRR5643513five period of Gastrodia elata49.500
SRR5643514five period of Gastrodia elata44.210
SRR5643515five period of Gastrodia elata46.510
SRR5643524five period of Gastrodia elata44.170
SRR5643525five period of Gastrodia elata64.280
SRR5643528five period of Gastrodia elata67.040
SRR5643658five period of Gastrodia elata73.050
SRR5643659five period of Gastrodia elata43.340
SRR5643660five period of Gastrodia elata43.510
SRR5643661five period of Gastrodia elata37.050
SRR5643662five period of Gastrodia elata39.810
SRR5643663five period of Gastrodia elata43.190
SRR5643664five period of Gastrodia elata42.920
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_141.860
SRR6049655Rhizomagastrodiae_C368-T10_good_148.910
SRR6049656Rhizomagastrodiae_C368-T07_good_145.740
SRR6049657Rhizomagastrodiae_C368-T07_good_141.580
SRR6049658Rhizomagastrodiae_C368-T04_good_150.900
SRR6049659Rhizomagastrodiae_C368-T04_good_152.270
SRR6049660Rhizomagastrodiae_C368-T01_good_138.850
SRR6049661Rhizomagastrodiae_C368-T04_good_145.560
SRR6049662Rhizomagastrodiae_C368-T01_good_139.620
SRR6049663Rhizomagastrodiae_C368-T01_good_140.920
SRR6049664Rhizomagastrodiae_C368-T10_good_153.200
SRR6049665Rhizomagastrodiae_C368-T10_good_153.200
SRP279888GastroGastrodia elata tuber 36.31
JuvenJuvenile tuber44.81
Mother_GastroMother tuber of Gastrodia elata 103.11
Mother_JuvenMother tuber of Juvenile 62.56