Gene detail

Detail information of GWHGAAEX000834/evm.TU.scaffold_100.105

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|148655047\|ref\|YP_001275252.1\|	5.00E-34	WD-40 repeat-containing protein [Roseiflexus sp. RS-1]
KOG	KOG0278	0	Serine/threonine kinase receptor-associated protein
nr	gi\|719980925\|ref\|XP_010249966.1\|	0	PREDICTED: serine-threonine kinase receptor-associated protein-like [Nelumbo nucifera]
Swissprot	tr\|Q38884\|EIF3I_ARATH	1.00E-34	Eukaryotic translation initiation factor 3 subunit I {ECO:0000255\|HAMAP-Rule:MF_03008}
trEMBL	tr\|M5W9P5\|M5W9P5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ03510.1}
TAIR	AT3G15610	0	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000099	3515121	3536879	+

Transcript Sequence
>GWHTAAEX000834 AATTCGTCACTTTTGCACCATAGATCGCTCCCCAGGAACCCCTGTCACTCGTGTCGTTTTGTTTTTTATCCTTTTTCAGTATTCGTATAATCGTATTGTGTACCGCCTGTGTACTTTTGTCTAAGAATTCGATCGAAATCCTATTTCTTATGTCGATGATTGTTCGGTGATTACGATTACGTTCGGATCTTGTAAAAAATTACTGCTTTTTTGCATCGCCATACCTTTTTCATTTTCCGATTTCAGCGTCGATTTCTTTGTTTGAGTCTAGTAGAGACATGCTTCAGCTTTAAATCCAAGAATGGAGTGTAGTGCTTGAAGAGTTTTTGTAGTTTTTTTGATGTCCTGTTTTTTCACCTTGTTTTTCTTCTAAATCGGGAGGGAGCTGTTGTAGATTTTAGGGTTTTGTTGCTTGCGCTTTTTGATCATCAAAGGAATGGACAGGAAGAAAGTGGCGGTACCTCTCGTTTGCCATGGGCACTCTCGCCCAGTTGTGGACTTGTTCTACAGCCCTATCACTCCAGACGGTTTCTTTCTTATCAGTGCTAGCAAGGATGCAAGCCCCATGCTGAGAAATGGGGAAACTGGAGATTGGATTGGAACATTTGAAGGGCATAAGGGTGCAGTTTGGAGCTGTTGCCTCGACATTAATGCACTGCATGCTGCTTCAGCTTCTGCTGATTTTTCAGCAAAAGTTTGGGATGCCTTAACTGGTGATGAACTTCATTCTTTTGAACACAAGCATATTGTTCGTGCATGTGCCTTCTCTGAGGATACTAACATGCTTCTTACTGGTGGTTTGGAAAAGATTTTAAGAATATTTGATTTGAATCGGCCTGATGCTCCACCAAGGGAAATTGATAAATCACCCAGTCCTATTAGAACAGCAGCCTGGCTTCATAGTGATCAAACAATCCTGAGTTCATTTACTGAACTAGGAGGCGTGAGGTTATGGGACGTAAGGACTGGAAAAATCATTCAAACCCTTGAAACTACGTCACCAGTCACGAGTGCGGAAGTCAGTCAAGATGGACGTTACATCACGACAGCCGATGGCTCAACTGTCAAATTTTGGGATGCGAATTATTTTGGGCTTGTGAAAAGCTACAAACTGCCGTGCAATGTCGAGTCTGCTTCACTTGAACCCAAGCTTGGCAATAAATTCATTGCCGGAGGAGAGGACATGTGGGTTCGCATTTTTGATTTTCACACGGGCGAAGAAATTGGATGCAATAAAGGTCACCATGGACCGGTCCATTGTGTGCGGTTCTCTCCGGGTGGCGAATCGTACGCATCAGGCTCCGAGGATGGGACCATTCGAATATGGCAGACCAGCCCCGTTATCATTGATGAGGAACCTTTGGGCGCTAATGGGTCTTCTTCCGGAAAGATCAAGATTGGTGTAAACGAGGTTGCTCGCAAAATTGAGGGATTCCACGTCTCGGATGATGCAAAGGCCGATAAGTTTGAGGCATCCACCGAATCTTAAAATGCCCTCCCCATGTTCCTTCAGCGATAAAGCAGCTTCCGTGGTATATCCCATCTTTTATGTTTTTTTAGCAATCTCTTTTGATTTTTTATATTTTCTCTACTAGAACTTTTCTTTACAAGTCCTTGTAGTCTTGTAATCTGTTTATTTTATATATAGTGTGTTTCAAGGTAATGAAACATCATCTATCTTGGAACTTCAGACATCTTGATCTTTGTTTTTTGATTTTTCAACTGTTTTTGACTAGGCTTTAGTTACTGCGTCAACGTACTTATCCTCACCATAATAATGATAGATATAGTTTGAGTGGC

Network for GWHGAAEX000834

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	54	89	0.0089
PF00400.31	WD40	94	130	0.0074
PF00400.31	WD40	179	214	0.013
PF00400.31	WD40	263	297	7.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K13137	STRAP, UNRIP	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	50.630
SRP064423	SRR2545915	Juvenile tuber	49.740
SRP108465	SRR5643513	five period of Gastrodia elata	58.410
	SRR5643514	five period of Gastrodia elata	62.080
	SRR5643515	five period of Gastrodia elata	57.350
	SRR5643524	five period of Gastrodia elata	57.510
	SRR5643525	five period of Gastrodia elata	72.820
	SRR5643528	five period of Gastrodia elata	60.620
	SRR5643658	five period of Gastrodia elata	57.570
	SRR5643659	five period of Gastrodia elata	57.180
	SRR5643660	five period of Gastrodia elata	56.520
	SRR5643661	five period of Gastrodia elata	55.490
	SRR5643662	five period of Gastrodia elata	55.240
	SRR5643663	five period of Gastrodia elata	55.470
	SRR5643664	five period of Gastrodia elata	56.140
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	41.170
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.470
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.080
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	47.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.770
SRP279888	Gastro	Gastrodia elata tuber	59.60
	Juven	Juvenile tuber	72.67
	Mother_Gastro	Mother tuber of Gastrodia elata	71.70
	Mother_Juven	Mother tuber of Juvenile	66.69