Detail information of GWHGAAEX000836/evm.TU.scaffold_100.107


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|258405611|ref|YP_003198353.1|5.00E-15RNP-1 like RNA-binding protein [Desulfohalobium retbaense DSM 5692]
KOGKOG01181.00E-67FOG: RRM domain
nrgi|695068620|ref|XP_009381258.1|1.89E-126PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q05966|GRP10_BRANA2.00E-15Glycine-rich RNA-binding protein 10
trEMBLtr|M0RM57|M0RM57_MUSAM1.00E-126Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P28330_001}
TAIRAT5G199601.00E-67RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009935480453589782-
Transcript Sequence

Network for GWHGAAEX000836

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_19786.20E-21
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms75.750
SRR2545915Juvenile tuber88.300
SRP108465SRR5643513five period of Gastrodia elata77.870
SRR5643514five period of Gastrodia elata73.830
SRR5643515five period of Gastrodia elata74.360
SRR5643524five period of Gastrodia elata80.480
SRR5643525five period of Gastrodia elata73.530
SRR5643528five period of Gastrodia elata66.120
SRR5643658five period of Gastrodia elata68.630
SRR5643659five period of Gastrodia elata80.410
SRR5643660five period of Gastrodia elata84.460
SRR5643661five period of Gastrodia elata88.730
SRR5643662five period of Gastrodia elata72.230
SRR5643663five period of Gastrodia elata71.920
SRR5643664five period of Gastrodia elata71.890
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_160.130
SRR6049655Rhizomagastrodiae_C368-T10_good_144.720
SRR6049656Rhizomagastrodiae_C368-T07_good_161.990
SRR6049657Rhizomagastrodiae_C368-T07_good_167.310
SRR6049658Rhizomagastrodiae_C368-T04_good_159.630
SRR6049659Rhizomagastrodiae_C368-T04_good_166.660
SRR6049660Rhizomagastrodiae_C368-T01_good_159.780
SRR6049661Rhizomagastrodiae_C368-T04_good_165.460
SRR6049662Rhizomagastrodiae_C368-T01_good_157.740
SRR6049663Rhizomagastrodiae_C368-T01_good_160.190
SRR6049664Rhizomagastrodiae_C368-T10_good_168.450
SRR6049665Rhizomagastrodiae_C368-T10_good_168.450
SRP279888GastroGastrodia elata tuber 102.36
JuvenJuvenile tuber114.85
Mother_GastroMother tuber of Gastrodia elata 70.00
Mother_JuvenMother tuber of Juvenile 86.32