Detail information of GWHGAAEX000847/evm.TU.scaffold_101.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332981568|ref|YP_004463009.1| | 1.00E-20 | serine/threonine protein kinase with PASTA sensor(s) [Mahella australiensis 50-1 BON] |
| KOG | KOG1187 | 0 | Serine/threonine protein kinase |
| nr | gi|514772909|ref|XP_004967611.1| | 0 | PREDICTED: pto-interacting protein 1-like isoform X1 [Setaria italica] |
| Swissprot | tr|Q41328|PTI1_SOLLC | 0 | Pto-interacting protein 1 |
| trEMBL | tr|K3XJ88|K3XJ88_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si001961m} |
| TAIR | AT3G62220 | 0 | Protein kinase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000096 | 1572 | 20073 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000847
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07714.16 | Pkinase_Tyr | 74 | 345 | 1.40E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_RLCK-VIII |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13436 | PTI1 | Plant-pathogen interaction | map04626 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.130 |
| SRR2545915 | Juvenile tuber | 24.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.460 |
| SRR5643514 | five period of Gastrodia elata | 25.660 | |
| SRR5643515 | five period of Gastrodia elata | 31.790 | |
| SRR5643524 | five period of Gastrodia elata | 27.880 | |
| SRR5643525 | five period of Gastrodia elata | 75.210 | |
| SRR5643528 | five period of Gastrodia elata | 67.050 | |
| SRR5643658 | five period of Gastrodia elata | 71.290 | |
| SRR5643659 | five period of Gastrodia elata | 38.270 | |
| SRR5643660 | five period of Gastrodia elata | 35.230 | |
| SRR5643661 | five period of Gastrodia elata | 46.200 | |
| SRR5643662 | five period of Gastrodia elata | 47.810 | |
| SRR5643663 | five period of Gastrodia elata | 44.800 | |
| SRR5643664 | five period of Gastrodia elata | 37.040 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 37.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 47.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 42.770 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 36.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 34.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 34.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 61.09 |
| Juven | Juvenile tuber | 33.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 77.28 | |
| Mother_Juven | Mother tuber of Juvenile | 64.02 |