Detail information of GWHGAAEX000848/evm.TU.scaffold_101.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46446666|ref|YP_008031.1| | 2.00E-58 | hypothetical protein pc1032 [Candidatus Protochlamydia amoebophila UWE25] |
| KOG | KOG1947 | 0 | Leucine rich repeat proteins, some proteins contain F-box |
| nr | gi|672164048|ref|XP_008801889.1| | 0 | PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|M0T3N4|M0T3N4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P02860_001} |
| TAIR | AT1G15740 | 0 | Leucine-rich repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000096 | 33425 | 107668 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000848
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13516.5 | LRR_6 | 133 | 151 | 0.2 |
| PF13306.5 | LRR_5 | 153 | 219 | 0.16 |
| PF13855.5 | LRR_8 | 232 | 291 | 2.50E-06 |
| PF13855.5 | LRR_8 | 323 | 364 | 9.30E-07 |
| PF13516.5 | LRR_6 | 424 | 444 | 1.4 |
| PF13855.5 | LRR_8 | 473 | 532 | 2.50E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.850 |
| SRR2545915 | Juvenile tuber | 47.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.910 |
| SRR5643514 | five period of Gastrodia elata | 31.830 | |
| SRR5643515 | five period of Gastrodia elata | 31.400 | |
| SRR5643524 | five period of Gastrodia elata | 28.560 | |
| SRR5643525 | five period of Gastrodia elata | 48.190 | |
| SRR5643528 | five period of Gastrodia elata | 39.940 | |
| SRR5643658 | five period of Gastrodia elata | 59.570 | |
| SRR5643659 | five period of Gastrodia elata | 29.040 | |
| SRR5643660 | five period of Gastrodia elata | 32.460 | |
| SRR5643661 | five period of Gastrodia elata | 28.300 | |
| SRR5643662 | five period of Gastrodia elata | 34.010 | |
| SRR5643663 | five period of Gastrodia elata | 34.920 | |
| SRR5643664 | five period of Gastrodia elata | 39.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.090 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 49.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 45.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 58.680 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.220 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.220 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.51 |
| Juven | Juvenile tuber | 42.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.47 | |
| Mother_Juven | Mother tuber of Juvenile | 28.26 |