Detail information of GWHGAAEX000856/evm.TU.scaffold_101.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743821069|ref|XP_010931945.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|P0C8Q8|PP394_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g19020, mitochondrial (Precursor) |
| trEMBL | tr|M5XIH8|M5XIH8_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ25316.1} (Fragment) |
| trEMBL | tr|M5XIH8|M5XIH8_PRUPE | 2.00E-26 | Uncharacterized protein {ECO:0000313|EMBL:EMJ25316.1} (Fragment) |
| TAIR | AT5G19020 | 0 | mitochondrial editing factor 18 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000096 | 735046 | 737043 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000856
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 117 | 147 | 1.60E-07 |
| PF01535.19 | PPR | 192 | 218 | 0.019 |
| PF01535.19 | PPR | 220 | 249 | 1.30E-06 |
| PF01535.19 | PPR | 251 | 278 | 0.00065 |
| PF13041.5 | PPR_2 | 351 | 378 | 1.90E-07 |
| PF13041.5 | PPR_2 | 381 | 428 | 2.80E-08 |
| PF01535.19 | PPR | 460 | 479 | 0.75 |
| PF01535.19 | PPR | 489 | 514 | 0.12 |
| PF01535.19 | PPR | 561 | 585 | 0.001 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.040 |
| SRR2545915 | Juvenile tuber | 0.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.950 |
| SRR5643514 | five period of Gastrodia elata | 1.210 | |
| SRR5643515 | five period of Gastrodia elata | 1.030 | |
| SRR5643524 | five period of Gastrodia elata | 0.950 | |
| SRR5643525 | five period of Gastrodia elata | 0.640 | |
| SRR5643528 | five period of Gastrodia elata | 0.360 | |
| SRR5643658 | five period of Gastrodia elata | 0.120 | |
| SRR5643659 | five period of Gastrodia elata | 1.420 | |
| SRR5643660 | five period of Gastrodia elata | 1.330 | |
| SRR5643661 | five period of Gastrodia elata | 1.680 | |
| SRR5643662 | five period of Gastrodia elata | 1.510 | |
| SRR5643663 | five period of Gastrodia elata | 1.960 | |
| SRR5643664 | five period of Gastrodia elata | 1.300 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.170 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.850 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.850 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.50 |
| Juven | Juvenile tuber | 0.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.39 | |
| Mother_Juven | Mother tuber of Juvenile | 0.36 |