Gene detail

Detail information of GWHGAAEX000858/evm.TU.scaffold_101.20

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108761664\|ref\|YP_632582.1\|	4.00E-17	JmjC domain-containing protein [Myxococcus xanthus DK 1622]
KOG	KOG2130	0	Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain
nr	gi\|743898484\|ref\|XP_011042532.1\|	0	PREDICTED: F-box protein At5g06550 [Populus euphratica]
Swissprot	tr\|Q67XX3\|FB252_ARATH	0	F-box protein At5g06550
trEMBL	tr\|U5FNV4\|U5FNV4_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP51611.1}
TAIR	AT5G06550	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000096	814549	837695	-

Transcript Sequence
>GWHTAAEX000858 AGTCTGTTCATCATGAAAGATTCTCGCCGGTTGTGGTATAAACCTAAATGATGATTTAGGTTTTTCCTGCTCTTGGGATTTCTGCTGGTGCATTCTTCCAAATTTCACTTCTCCATCCCCAGCATGCCGGGAGCTTTCAATGTACTCTCACCTGCACATCTATCCAGAACAAAAAAGAAGAGAAGAGGAGAGTCCTCAACTTCAAATTCCGCATTTACAAAAACTTCAAGTGTAGAAATCATAGCAAATGCATGCGTGGAAGACGAGGAAGCAAACATGGAACGATTTAACCTGAAAGCGTCATCTTGTTCTCAATCTCACTTCATTCAGCCTTTAGGAAACCTCCTTCTGCTCGATCCCTCTTCCAATATCCGCAACCCCGGTCTCGGTAACCTCCAAATTCTTTCAGACGAGCTCCTCCTCGACATTCTCAGCCCTCTAAGCGCTTGCGATCTCATAGTTTTGTCAACAGTGAGCAAATCCCTTTACGTATTCTCCACGCACGAGCCTCTGTGGCGGAACCTCGTTCTACAGGAATTTAATGGTGAGTTTTTGTTTTCTAGATCATGGCGATCCACCTATATAACATCCGTCAATCCTTATTCTTCTCCTGTCTCTACTGCGTCTTCGACTCTCCGCATTAGAGATTTTTACTCGGACTACCTCTTCCAGAGCTGGCTTTGCGCCAACATGGAGATGAAGCCGGAGTGGCTTGAGAGGGACAACATCGAGAGGAGGCAGCAATTGTCATTGGAAGATTTTGTGAATTGCTTTGAGGAGCTCAATAAACCGGTGCTACTTGAGGGATGCATTGAGCACTGGCCGGCCATGGAGAACTGGAATAAGGATAGCTTGATTCAGATGTGTGGGGATGTTAAATTTGCTGTGGGACCTGTTGGGATGACAATGGAGAAGTATTTTTGCTATGCAGAGACAGTGAAAGAGGAGCGTCCATTGTACTTATTTGATTCAAAGTTTGCTGAGAAGATTAGTGTGCTTGATTCAGATTATGAAGTTCCTTCATACTTCAAGGAAGATCTGTTTTGTGTGCTTGGGAAGGATCGGCCGGATTACAGGTGGATCATAATTGGACCAGCAGGATCAGGATCTTCCTTTCACGTGGATCCCAACTCTACTTCTGCATGGAATGCTGTAATTAGGGGATCAAAGAAGTGGGTGATGTTTCCATCTGAGGTTGTTCCGCCAGGAGTTTACCCAAGTCTGGATGGATCTGAGGTTGCTTGTCCTGTGTCTATTATGGAGTGGTTCATGAACTTTTATGGAGCATGTAGGAATTGGAAGAAGAGGCCTATTGAGTGTGTGTGTAAGGCTGGCGAGATGATTTTTGTTCCCAATGGATGGTGGCACCTTGTAATCAATCTTGAGGACTCAATTGCCATCACACAAAATTATGTGAGCAGGAGGAATCTCTTAAATGTTCTGGATTTTCTAAAGAAGCCCAATGCAAATGAACTCATTTCTGGAACCAAAGATAGAGTAAATTTGTATGACAACTTTAGATCTGCCATTGAAGCTGCTTTTCCTGGAACAATTGATCAGCTTTCTGCCAAAGCCAAGGAGAAGATGGCTCAAAATAAGCAGCTAAACTTCTGGGAATCTGTTGCCGATGCCAATACTGGAGGATTCAGGTTTTCTTTCTAGCTTGATTGTATCCGACATTTACTTAATATATATACATCTCAAAATATCTTTCATTTGTATGCCCGTCCGAGTTTAAGCTGTTGTTGAGAATCTTCTTATTCTAGGCATGCACGAGTTGTTTATTCAATTGGTGATCAATTCATTTTATTTGCTCATTGAGAATGATTCAACTGTAGCTATCTAAAATTTTGAATGCTCGATTTTTTTGCCAGTTTTGACAATTTGGACACTGATTCCATGGATAAAATATTTTATAGGTTCCAGTTATTCTTGAATTTGTTTCTGGAAGGCATACTTAGTTTGAACGACCATTTAGATAAAGGTCATATTATTGCATTAATATATTTACACACACACACATATATGCATATGTCAAAAAGGAGGAGGTTAAACAACCACATTGTTTTATTCATAGTTAAAAGCTCTTTAAGG

Network for GWHGAAEX000858

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	96	136	3.20E-06
PF13621.5	Cupin_8	212	430	9.80E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	55.780
SRP064423	SRR2545915	Juvenile tuber	67.330
SRP108465	SRR5643513	five period of Gastrodia elata	19.790
	SRR5643514	five period of Gastrodia elata	18.110
	SRR5643515	five period of Gastrodia elata	15.590
	SRR5643524	five period of Gastrodia elata	16.250
	SRR5643525	five period of Gastrodia elata	12.610
	SRR5643528	five period of Gastrodia elata	9.730
	SRR5643658	five period of Gastrodia elata	12.300
	SRR5643659	five period of Gastrodia elata	25.770
	SRR5643660	five period of Gastrodia elata	30.120
	SRR5643661	five period of Gastrodia elata	27.130
	SRR5643662	five period of Gastrodia elata	27.790
	SRR5643663	five period of Gastrodia elata	28.440
	SRR5643664	five period of Gastrodia elata	26.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	36.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.880
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.690
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.700
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.660
SRP279888	Gastro	Gastrodia elata tuber	48.07
	Juven	Juvenile tuber	37.61
	Mother_Gastro	Mother tuber of Gastrodia elata	12.99
	Mother_Juven	Mother tuber of Juvenile	18.54