Detail information of GWHGAAEX000860/evm.TU.scaffold_101.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08007.00E-55FOG: Predicted E3 ubiquitin ligase
nrgi|743804142|ref|XP_010927112.1|2.93E-68PREDICTED: RING-H2 finger protein ATL43-like [Elaeis guineensis]
Swissprottr|Q5EAE9|ATL43_ARATH2.00E-55RING-H2 finger protein ATL43 (Precursor)
trEMBLtr|B9RAZ1|B9RAZ1_RICCO3.00E-66Ring finger protein, putative {ECO:0000313|EMBL:EEF51968.1}
TAIRAT5G058107.00E-55RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000009610682391069782-
Transcript Sequence

Network for GWHGAAEX000860

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2811243.80E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.200
SRR2545915Juvenile tuber0.350
SRP108465SRR5643513five period of Gastrodia elata1.060
SRR5643514five period of Gastrodia elata1.150
SRR5643515five period of Gastrodia elata0.400
SRR5643524five period of Gastrodia elata0.700
SRR5643525five period of Gastrodia elata0.100
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata0.260
SRR5643660five period of Gastrodia elata0.050
SRR5643661five period of Gastrodia elata0.100
SRR5643662five period of Gastrodia elata0.050
SRR5643663five period of Gastrodia elata0.140
SRR5643664five period of Gastrodia elata0.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_11.370
SRR6049655Rhizomagastrodiae_C368-T10_good_10.630
SRR6049656Rhizomagastrodiae_C368-T07_good_12.260
SRR6049657Rhizomagastrodiae_C368-T07_good_11.760
SRR6049658Rhizomagastrodiae_C368-T04_good_11.330
SRR6049659Rhizomagastrodiae_C368-T04_good_10.940
SRR6049660Rhizomagastrodiae_C368-T01_good_11.510
SRR6049661Rhizomagastrodiae_C368-T04_good_12.610
SRR6049662Rhizomagastrodiae_C368-T01_good_13.030
SRR6049663Rhizomagastrodiae_C368-T01_good_11.120
SRR6049664Rhizomagastrodiae_C368-T10_good_12.380
SRR6049665Rhizomagastrodiae_C368-T10_good_12.380
SRP279888GastroGastrodia elata tuber 0.14
JuvenJuvenile tuber0.10
Mother_GastroMother tuber of Gastrodia elata 0.20
Mother_JuvenMother tuber of Juvenile 0.13