Gene detail

Detail information of GWHGAAEX000861/evm.TU.scaffold_101.25

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743803963\|ref\|XP_010927067.1\|	9.69E-10	PREDICTED: chromo domain-containing protein cec-1-like [Elaeis guineensis]

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000096	1078918	1080836	+

Transcript Sequence
>GWHTAAEX000861 AACAGGCACTATGGGCAACGGAGAGAAGCGAGAATTTCTCGGGGGCTAAAACTTGGCATTGCCAGATGAACGTTTCTCCCCCATTTGCCCTCATTCTTCCGCCTCCCATCCTCATCGCCTTCCTTTAAAATTTCCTCACATTTTCTTAACCATGTGATTGGCATCCATCGCCTCCATTGAATTCAAGAACCATCTGATGATGGCAACAAAGACAACCAGTTCTGATAGAAGCGATAAGGCTCCCCTCTCCGGCGGAGACATCGCTAAGAAATCTGTTCCCAATTATCTAAAGCCAACGGCTTGTTCTCCTATAAAGGCGCATTCAGGAAGAGCAACCCATGAAATTAAGAAATCATCGAAGCCTGCCTCCCCCTCATCAAGACCAGGAAGCTCCTCCAGCCTCAGCAGCAATGGCAAAGCCTCTCAGACTGTAAAGACAACAAGCCCTGTCTCCAAAGGGAAGAAGCTCACTGGCCCTATGCCTGTCAAGAAAAAGGAATCCTCCATCAAAACTGCTGCTTTTCCCCCTCAAGTAACTGCCACTAAAAGGCATGTGCTCCAGAAATCGCAGAGCAATTGTAGGAAGGCAGTTCAGGCCTTGTGTAAACTGAAGAATGTGATTGATGAAGGGAAACACATTGAGCAACAGAAGCATAGAGCTTTCAAAGACCCTACTGTGGCTGTAAGAAAGGCAACACCAGTGACTATTAAGAAGGAGGATGCTCCCAGAAATAATGATGTGATTGAAGAGACCATGGCCAATTTGATGGGGACAAAGAAAAATAACGTGCTTGCATTGGTTGGAGCCTTTGAAATGTTCATGTCGGTGAAGGAGCCGAATGGCCGGCAAGCTCATAAGGCAAATCATGCTCAACCTTGGCAACGAGTTCAACAAGCTCTGGCAGAGGTGCAGAGATCTGAAAAACAGAAGAATGAGGGTGTTATTGAGGCTCAGAAGAGGCAAGAGGTTCTAGATGCTCAGAAGGAACAGAAGGATAGGAATACATTGCTAAATGAAGTTGGTAATCAGGCTCTGGAAATATGTGAGGAGAAAGAGGATGCGGTGATAAAAATAGTTGAAGAAAAGGCAGAACCTGATGAGGCTTTTAGTCATGGAGAGTTGGGAGAAGATGCAATTATGGTAAAAGAAGAAGAAGAAGAAGAAAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGATAAAGCTCTTCTGAAGAATAGCAACACGGGAGAAGAGGAGCTCACAGAGTCAATGAATGCGGTCATTGATTAAACTTTTTTGCTGCTCAACTCTTGTTGATTCTGCTCAAGATGTGTTATGCTGTCATGATGATGCAACTGAAACATTAATGTCGTTTTGCATGTTTGTTTTGATAATTTTGTCATCTTGACTGTACATCTACTGAATCTGTATGTGCTATAATTCTGTAATTTACATTAAGTTAGTAATTTGAAATTGCATATATATGATTTTTTAAAACAGAA

Network for GWHGAAEX000861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07839.10	CaM_binding	113	210	2.00E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005516	Molecular Function	calmodulin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.960
SRP064423	SRR2545915	Juvenile tuber	0.900
SRP108465	SRR5643513	five period of Gastrodia elata	2.320
	SRR5643514	five period of Gastrodia elata	3.710
	SRR5643515	five period of Gastrodia elata	2.010
	SRR5643524	five period of Gastrodia elata	2.560
	SRR5643525	five period of Gastrodia elata	1.230
	SRR5643528	five period of Gastrodia elata	0.220
	SRR5643658	five period of Gastrodia elata	0.500
	SRR5643659	five period of Gastrodia elata	0.990
	SRR5643660	five period of Gastrodia elata	0.740
	SRR5643661	five period of Gastrodia elata	0.800
	SRR5643662	five period of Gastrodia elata	0.390
	SRR5643663	five period of Gastrodia elata	0.680
	SRR5643664	five period of Gastrodia elata	0.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.810
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.730
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.640
SRP279888	Gastro	Gastrodia elata tuber	0.09
	Juven	Juvenile tuber	0.16
	Mother_Gastro	Mother tuber of Gastrodia elata	0.20
	Mother_Juven	Mother tuber of Juvenile	0.17