Detail information of GWHGAAEX000879/evm.TU.scaffold_101.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672205936|ref|XP_008779295.1| | 1.92E-58 | PREDICTED: ethylene-responsive transcription factor ERF003-like [Phoenix dactylifera] |
| Swissprot | tr|Q94AW5|ERF03_ARATH | 6.00E-43 | Ethylene-responsive transcription factor ERF003 |
| trEMBL | tr|M0SKD7|M0SKD7_MUSAM | 4.00E-55 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02200_001} |
| TAIR | AT5G25190 | 2.00E-42 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000096 | 3468989 | 3470268 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000879
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 6 | 55 | 4.10E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.090 |
| SRR2545915 | Juvenile tuber | 0.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.160 |
| SRR5643514 | five period of Gastrodia elata | 0.870 | |
| SRR5643515 | five period of Gastrodia elata | 0.540 | |
| SRR5643524 | five period of Gastrodia elata | 0.800 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.080 | |
| SRR5643660 | five period of Gastrodia elata | 0.170 | |
| SRR5643661 | five period of Gastrodia elata | 0.180 | |
| SRR5643662 | five period of Gastrodia elata | 0.170 | |
| SRR5643663 | five period of Gastrodia elata | 0.070 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.06 |
| Juven | Juvenile tuber | 8.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.15 | |
| Mother_Juven | Mother tuber of Juvenile | 0.65 |