Detail information of GWHGAAEX000888/evm.TU.scaffold_102.11
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|511060533|ref|YP_008072418.1| | 6.00E-43 | tRNA methylase Trm12p Wyeosine biosynthesis [Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1] |
| KOG | KOG1227 | 7.00E-124 | Putative methyltransferase |
| nr | gi|743759019|ref|XP_010929911.1| | 0 | PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8H4D4|TYW23_ORYSJ | 0 | tRNA wybutosine-synthesizing protein 2 homolog |
| trEMBL | tr|M0TB91|M0TB91_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P29460_001} |
| TAIR | AT4G04670_3 | 7.00E-124 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000108 | 475603 | 560907 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000888
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02676.13 | TYW3 | 21 | 228 | 1.30E-60 |
| PF13418.5 | Kelch_4 | 375 | 416 | 1.50E-10 |
| PF13854.5 | Kelch_5 | 473 | 511 | 4.90E-07 |
| PF02475.15 | Met_10 | 812 | 1012 | 7.30E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.050 |
| SRR2545915 | Juvenile tuber | 15.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.490 |
| SRR5643514 | five period of Gastrodia elata | 7.910 | |
| SRR5643515 | five period of Gastrodia elata | 7.400 | |
| SRR5643524 | five period of Gastrodia elata | 8.400 | |
| SRR5643525 | five period of Gastrodia elata | 7.240 | |
| SRR5643528 | five period of Gastrodia elata | 8.180 | |
| SRR5643658 | five period of Gastrodia elata | 6.240 | |
| SRR5643659 | five period of Gastrodia elata | 8.760 | |
| SRR5643660 | five period of Gastrodia elata | 9.190 | |
| SRR5643661 | five period of Gastrodia elata | 8.390 | |
| SRR5643662 | five period of Gastrodia elata | 10.100 | |
| SRR5643663 | five period of Gastrodia elata | 7.900 | |
| SRR5643664 | five period of Gastrodia elata | 9.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.960 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.63 |
| Juven | Juvenile tuber | 18.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.75 | |
| Mother_Juven | Mother tuber of Juvenile | 11.26 |