Gene detail

Detail information of GWHGAAEX000890/evm.TU.scaffold_102.12

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1134	5.00E-156	Uncharacterized conserved protein
nr	gi\|672158326\|ref\|XP_008798900.1\|	0	PREDICTED: CSC1-like protein RXW8 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|F4IBD7\|CSCLA_ARATH	0	CSC1-like protein RXW8
trEMBL	tr\|M0STY7\|M0STY7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P32250_001}
TAIR	AT1G69450	5.00E-156	Early-responsive to dehydration stress protein (ERD4)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000108	576349	611019	+

Transcript Sequence
>GWHTAAEX000890 ATGAAGCTCGCCGCTCTGCTGACCTCCGCGGGCATAAACATCGGCCTCTGCGCGCTGTTCATTTCGCTCTATTCGGTCATCAGGAAGCAGCCTTCCAATGTTCACGTGTATTTTGGGCGGAGGTTGTCGCGGGAGCGCAGCAGGCGCAGCAATTCCTTCAATTTCGACAGGTTTTTGCCTACGCCGAGTTGGATACTTGAGGCCTGGGGACCGACGGAGGATGAGATTTTGGCATCCGTTGGACTCGATGCGGTTGTCTTCCTCAGAATGATTGTTTTTAGTATTCGAATTTTTTCCATTGCTTTTCTGATCTGCATGTTTTGGGTATTGCCACTGAATTATTACGGACAAGAAATTGTTCATGACCGGATTCGTCATGAATCTTTGGAAGTTTTTACTATTGGCAATGTCAAGGAAGGGTCTCAATGGTTGTGGGTTCACTGTCTTGCCCTGTATATTATCTCTTTCTCTGCTTGCACGCTTCTTTATTTTGAATATCAGAACATTTCCAAGCTTAGATTGGATCATGTTACAGCTTGTCATCCCAAGCCCAGTCAATTCACCATTCTTGTTCGTTCAATACCGAGATTGAGTGACATGCCACTTGATGCTGTCATAAAAAATTTTTTCATAACTTATCATGGAATGAGTTACTTGTCACATCAAAGGGTTTATCGGACTGGAGCATTTCACAAATTTATGACTAATGCAGAGAAGGTATGTAAGAAGTTTGTCCGCCTAAGGGATGCAACTTTTAACTTTAAGCGAGGACCTTGTAATTACCGATGCGGCCTTTGTGGAGGAACTTCTAGATCATTTGTTCTGTACAATAATGTTTTTGAAATAGAAGATAAACGAAACTCACTGAGCCAGCCTGGTTCTGGGAAAAAGGAAGAGGATTGCTCAGCTGCATTGGTTTTTTTGAAAACTCGGTATGCTGCAGCTGTGGCTTCTCAAGTTCTTCAATCATCAAACCCTATGTTATGGGTTATTGATTTGGCTCCTCAACCTGATGACCTCTACTGGCCAAACCTTTCCATACCATACAGGCAACTTTGGATTCGTCGAATATCAGTAGTTGCAGCTACTGTTTTATTTTTGTTTCTGTTTCTCATCCCAGTAACATTTGTACAAGGTCTTATTCAGTTAGAGACATTACAACAGAAGCTCCCTTTTTTAAGAGGTATACTGACAAACAAATACATGATCCAGCTGGTCACCGGCTATCTCCCCAGCGTCATTCTGCTGCTATTTTTCTACACCGTTCCTCCAACAATGATGCTATTTTCTACAGTAGAAGGAGCCATCTCTCGCAGTGGTAGAAAAAAGAGTGCCTGTTGTAAAGTATTGTCCTTCACCATTTGGAATATTTTCTTTGTCAATGTACTGTCTGCATCCATCATCCATCAATTGATGTTCATCTCACAACCAAAAGACATTCCTTTTGTTCTTGCTCGAACTTTGCCGGGGCAGGCTACTTTTTTTATCACTTATGTGCTGACTTCAGGATGGACAGGCTTATGCGCTGAGCTAGTACAATTTTGTTCTCTAGCTTATAATCTGCTGCAAAAATGGGTGTTCACGAATAAGGTAGATGATCCAACACTGGCGCCAACTTTTCCATACCACACTGAAGTTCCCAGAGTTCTGCTCTTCGGGCTTCTCGGATTCACATGCTCTATTCTGGCGCCGCTGATACTGCCGTTCTTGATGGTCTATTTCTTGCTGGGCTACTTGGTCTATCGCAACCAGATTCTGAATGTGTATGGAACAAAGTACGAGAGCGGGGGGCAGCTGTGGCCGGTGGTCCACAACGCGACGATCTTCTCACTGGGGCTGGCACAGATAATAGCACTGGGAGTGTTCGGGCTGAAGAAATCGACGGCGGCGTCAGCACTTACCATTCCCCTCCTCATCTCCACCCTTCTCTTCCACGGATACTGCCGCCAGCGCTTCCTCCCGCTCTTCAAGAACCTCTCCGCCCAGGCCCTTGTCGAGATGGACAGTGACGACGAGGCCTCTGGCAGGATGGAGGAAATCCATCTGATGGTTCGAGCGGCTTACCGTCAGCCTTTGGATCATCATCAAGATCATCGGATTCGGATGGCTACCGCCGAAGAGGGAAGCAAGATGGAAAACTCCTCTGCCCCTCCCATGCCTTCCTAG

Network for GWHGAAEX000890

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13967.5	RSN1_TM	6	165	1.90E-38
PF14703.5	PHM7_cyt	186	344	3.40E-17
PF02714.14	RSN1_7TM	355	622	1.20E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.580
SRP064423	SRR2545915	Juvenile tuber	1.740
SRP108465	SRR5643513	five period of Gastrodia elata	5.400
	SRR5643514	five period of Gastrodia elata	5.720
	SRR5643515	five period of Gastrodia elata	3.590
	SRR5643524	five period of Gastrodia elata	4.370
	SRR5643525	five period of Gastrodia elata	15.100
	SRR5643528	five period of Gastrodia elata	13.400
	SRR5643658	five period of Gastrodia elata	11.760
	SRR5643659	five period of Gastrodia elata	1.420
	SRR5643660	five period of Gastrodia elata	1.410
	SRR5643661	five period of Gastrodia elata	1.700
	SRR5643662	five period of Gastrodia elata	1.890
	SRR5643663	five period of Gastrodia elata	1.970
	SRR5643664	five period of Gastrodia elata	1.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.160
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.740
SRP279888	Gastro	Gastrodia elata tuber	2.07
	Juven	Juvenile tuber	3.07
	Mother_Gastro	Mother tuber of Gastrodia elata	3.80
	Mother_Juven	Mother tuber of Juvenile	4.51