Detail information of GWHGAAEX000893/evm.TU.scaffold_102.22


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|255767817|ref|NP_391734.2|2.00E-88branched-chain-amino acid aminotransferase 2 [Bacillus subtilis subsp. subtilis str. 168]
KOGKOG09750Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily
nrgi|695048737|ref|XP_009412282.1|0PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9FYA6|BCAT5_ARATH0Branched-chain-amino-acid aminotransferase 5, chloroplastic (Precursor)
trEMBLtr|M0TMR2|M0TMR2_MUSAM0Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}
TAIRAT5G657800branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000010810951781134355-
Transcript Sequence

Network for GWHGAAEX000893

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01063.18Aminotran_43155537.70E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00826E2.6.1.42, ilvE Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Pantothenate and CoA biosynthesismap00770
Glucosinolate biosynthesismap00966

Gene Ontology

GO term OntologyName
GO:0009081Biological Processbranched-chain amino acid metabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0004084Molecular Functionbranched-chain-amino-acid transaminase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms211.190
SRR2545915Juvenile tuber171.640
SRP108465SRR5643513five period of Gastrodia elata93.560
SRR5643514five period of Gastrodia elata78.220
SRR5643515five period of Gastrodia elata82.830
SRR5643524five period of Gastrodia elata81.030
SRR5643525five period of Gastrodia elata63.200
SRR5643528five period of Gastrodia elata65.840
SRR5643658five period of Gastrodia elata58.800
SRR5643659five period of Gastrodia elata98.460
SRR5643660five period of Gastrodia elata141.360
SRR5643661five period of Gastrodia elata126.120
SRR5643662five period of Gastrodia elata168.980
SRR5643663five period of Gastrodia elata136.350
SRR5643664five period of Gastrodia elata179.970
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1101.380
SRR6049655Rhizomagastrodiae_C368-T10_good_1113.690
SRR6049656Rhizomagastrodiae_C368-T07_good_189.330
SRR6049657Rhizomagastrodiae_C368-T07_good_1126.450
SRR6049658Rhizomagastrodiae_C368-T04_good_198.910
SRR6049659Rhizomagastrodiae_C368-T04_good_1116.260
SRR6049660Rhizomagastrodiae_C368-T01_good_1112.560
SRR6049661Rhizomagastrodiae_C368-T04_good_1112.280
SRR6049662Rhizomagastrodiae_C368-T01_good_187.870
SRR6049663Rhizomagastrodiae_C368-T01_good_197.860
SRR6049664Rhizomagastrodiae_C368-T10_good_171.350
SRR6049665Rhizomagastrodiae_C368-T10_good_171.350
SRP279888GastroGastrodia elata tuber 92.68
JuvenJuvenile tuber67.73
Mother_GastroMother tuber of Gastrodia elata 43.74
Mother_JuvenMother tuber of Juvenile 53.38