Detail information of GWHGAAEX000894/evm.TU.scaffold_102.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 2.00E-63 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|695054379|ref|XP_009415318.1| | 7.27E-75 | PREDICTED: homeobox-leucine zipper protein HOX19-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q8GRL4|HOX19_ORYSJ | 2.00E-71 | Homeobox-leucine zipper protein HOX19 |
| trEMBL | tr|M0TTV1|M0TTV1_MUSAM | 2.00E-75 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P26480_001} |
| TAIR | AT4G37790 | 2.00E-63 | Homeobox-leucine zipper protein family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000108 | 1317410 | 1318552 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000894
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 90 | 144 | 1.40E-15 |
| PF02183.17 | HALZ | 146 | 180 | 2.10E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 258.350 |
| SRR2545915 | Juvenile tuber | 64.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 135.000 |
| SRR5643514 | five period of Gastrodia elata | 136.480 | |
| SRR5643515 | five period of Gastrodia elata | 167.560 | |
| SRR5643524 | five period of Gastrodia elata | 149.890 | |
| SRR5643525 | five period of Gastrodia elata | 737.150 | |
| SRR5643528 | five period of Gastrodia elata | 917.360 | |
| SRR5643658 | five period of Gastrodia elata | 1508.460 | |
| SRR5643659 | five period of Gastrodia elata | 71.840 | |
| SRR5643660 | five period of Gastrodia elata | 70.690 | |
| SRR5643661 | five period of Gastrodia elata | 57.720 | |
| SRR5643662 | five period of Gastrodia elata | 68.730 | |
| SRR5643663 | five period of Gastrodia elata | 49.340 | |
| SRR5643664 | five period of Gastrodia elata | 90.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 146.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 183.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 105.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 195.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 274.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 396.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 170.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 234.580 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 92.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 148.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 114.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 114.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 157.62 |
| Juven | Juvenile tuber | 101.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1,314.84 | |
| Mother_Juven | Mother tuber of Juvenile | 335.16 |