Detail information of GWHGAAEX000897/evm.TU.scaffold_102.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302670881|ref|YP_003830841.1| | 2.00E-10 | endo-1,3(4)-beta-glucanase [Butyrivibrio proteoclasticus B316] |
| nr | gi|672124732|ref|XP_008785762.1| | 2.08E-147 | PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 10 [Phoenix dactylifera] |
| Swissprot | tr|Q9ZVK1|XTH10_ARATH | 1.00E-129 | Probable xyloglucan endotransglucosylase/hydrolase protein 10 (Precursor) |
| trEMBL | tr|F6HBP1|F6HBP1_VITVI | 2.00E-141 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
| TAIR | AT2G14620 | 4.00E-129 | xyloglucan endotransglucosylase/hydrolase 10 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000108 | 1802498 | 1823926 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000897
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 95 | 275 | 1.20E-55 |
| PF06955.11 | XET_C | 303 | 351 | 2.80E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005618 | Cellular Component | cell wall |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.620 |
| SRR5643514 | five period of Gastrodia elata | 0.640 | |
| SRR5643515 | five period of Gastrodia elata | 0.360 | |
| SRR5643524 | five period of Gastrodia elata | 0.710 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.850 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.48 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |