Gene detail

Detail information of GWHGAAEX000899/evm.TU.scaffold_102.36

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743769232\|ref\|XP_010914896.1\|	1.89E-82	PREDICTED: uncharacterized protein LOC105040183 [Elaeis guineensis]
trEMBL	tr\|F6H309\|F6H309_VITVI	2.00E-78	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46787.1}
TAIR	AT5G11270	3.00E-51	overexpressor of cationic peroxidase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000108	2055763	2076902	-

Transcript Sequence
>GWHTAAEX000899 GGAAGAAGAAGTACAGAGGAGAAGAAAAGAAAGATAAACTTCTCGTCGAGGGGTGATGAGCTGATGGCCACCTATTCTTATGCATGGCCATTGTCACCAGCTATCAGGGTTTTGAGTTCTCGCTCCAACCCTAACCGCAGCTCCCTTCTATCTGGGAATGAAATCCCGAAGCCATTTCTTGCTCTTTTTCCTTCACCTTCCCCACGGTTTTCCTCTCTAGTCGTCTTTTCTCGCCAAAGGAAGGGCAGTTCAGTTCCTCAGACTCAGCTTTCCAAGTCCAAGAATACTCTAGATCATGATGACATGAAGGAAGATGAGCCTGATTATGATGATGATTATGATGATGATGATAATGATGCTGATTATGATGATGAAGATGATCCATTTGAAGCACTGTATAAGAAGCTAGAAGAGGACCTAAAAAATGACAAGACATTTTCTGACAATGAAGATGATGAAATAACCGAAGATGATTTTTCTAAGGCTGAAAAGGAGCTTGATGAAGCATTCTTTGATGAAGAAGAGTCAGATGGCACGGATTATTCTGAAGAAGTGCAGCCAAGGCTCAAGAACTGGCAGCTTCGACGGCTGGCCCGTGCTCTGAAGACTGGCCGCCGCAAAACTGCTATAAAAAACCTATCAGAAGAGCTTGGACTTGAAAGAGCTTATGTTCTAGAACTGCTTCGTCAACCGCCTCCTAGTCTCTTGATGATGCTCGCTTCTTTGCCTGATGAAGTTGCTGAAAAAGTGCCAATGGAGGCTTCCTTAGATACTGAAAAATTGCCAATGGAGGCTTCCCTTGATTCTGAAAAGGAGCTGAAAACTGAGGTTCCTATTCATGCTATGCAGACAAGTTGGACGACGAGAAAAAGAGTTAAAAAGGTTCAACTTTCTACCCTTGAAACGGTGTATGCCCGAACTAAGCGTCCCACTAACACAATGATCAGCAGCATCGTCCATGTAACAAATCTTCCTTGGGAAAAAGTGGTAAAATGGTTTGAGGATAAGCGAGCTGAAGATGGAATTTCTGATCTTCATCGCAGAAGATTTGTTCGAAACCGACCACAATCTATCTCATGATGAGACTATATACTGGCAGATATCTTTTTCTATTCCAAGAAAGTGAAGAGTTTTTTAAAGGCAAATTTTTAATTGGAAGATTTATTCAATGACTTGTGATATAAGAGATGCCCTTTTTCTCTTTTAAGATGGGCAAAGTGCATCGACTTTACATACTTGATAGAGGTTTGGGAGTTGTATATGGTGCAGGAGATAGTTTGAGAGGAGTGCCCCTATTGGAAGAAAAGAAGCACCTCGCGGCTCTTAGGAAAAGAGATGAAATTTAAAATTTGTATGTTTGGCATTTAAAATGATGCGATTAATGATGAATGAACTTTTAAGATAATGTTTTCTTTTCATTTTATTTGAATAACTTAATAGGGTCCTAGTTGCAATCGAAGAAAAATTGCAACAAAGCACACTTTGATCTGTGATGCTGCCATTGATGTTCAAGATAATGAATTAATCTACATCCTTGCATGGTAAATGCATGCAACATCAAATATTTAGTATAGTTACACATTCATTTATATGACTGTTCTTTACACATGAATAAATTTG

Network for GWHGAAEX000899

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	267	317	4.40E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.530
SRP064423	SRR2545915	Juvenile tuber	7.570
SRP108465	SRR5643513	five period of Gastrodia elata	4.260
	SRR5643514	five period of Gastrodia elata	3.740
	SRR5643515	five period of Gastrodia elata	4.480
	SRR5643524	five period of Gastrodia elata	4.110
	SRR5643525	five period of Gastrodia elata	5.710
	SRR5643528	five period of Gastrodia elata	7.480
	SRR5643658	five period of Gastrodia elata	5.480
	SRR5643659	five period of Gastrodia elata	5.700
	SRR5643660	five period of Gastrodia elata	5.490
	SRR5643661	five period of Gastrodia elata	4.360
	SRR5643662	five period of Gastrodia elata	7.620
	SRR5643663	five period of Gastrodia elata	7.890
	SRR5643664	five period of Gastrodia elata	7.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.320
SRP279888	Gastro	Gastrodia elata tuber	9.26
	Juven	Juvenile tuber	9.83
	Mother_Gastro	Mother tuber of Gastrodia elata	3.57
	Mother_Juven	Mother tuber of Juvenile	9.56