Detail information of GWHGAAEX000901/evm.TU.scaffold_102.38
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|11498897|ref|NP_070128.1| | 6.00E-26 | transcription initiation factor IIB [Archaeoglobus fulgidus DSM 4304] |
| KOG | KOG1597 | 0 | Transcription initiation factor TFIIB |
| nr | gi|743868813|ref|XP_010905668.1| | 0 | PREDICTED: uncharacterized protein LOC105032799 [Elaeis guineensis] |
| Swissprot | tr|Q8W0W3|TF2B_ORYSJ | 4.00E-22 | Transcription initiation factor IIB |
| trEMBL | tr|M0SWU5|M0SWU5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P08660_001} |
| TAIR | AT4G36650 | 0 | plant-specific TFIIB-related protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000108 | 2120908 | 2199745 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX000901
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00382.18 | TFIIB | 179 | 249 | 6.10E-08 |
| PF00382.18 | TFIIB | 275 | 345 | 5.00E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03124 | TFIIB, GTF2B, SUA7, tfb | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0070897 | Biological Process | DNA-templated transcriptional preinitiation complex assembly |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0017025 | Molecular Function | TBP-class protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.340 |
| SRR2545915 | Juvenile tuber | 4.050 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.350 |
| SRR5643514 | five period of Gastrodia elata | 6.710 | |
| SRR5643515 | five period of Gastrodia elata | 7.090 | |
| SRR5643524 | five period of Gastrodia elata | 7.990 | |
| SRR5643525 | five period of Gastrodia elata | 10.290 | |
| SRR5643528 | five period of Gastrodia elata | 11.420 | |
| SRR5643658 | five period of Gastrodia elata | 14.310 | |
| SRR5643659 | five period of Gastrodia elata | 9.960 | |
| SRR5643660 | five period of Gastrodia elata | 9.170 | |
| SRR5643661 | five period of Gastrodia elata | 10.310 | |
| SRR5643662 | five period of Gastrodia elata | 9.510 | |
| SRR5643663 | five period of Gastrodia elata | 9.820 | |
| SRR5643664 | five period of Gastrodia elata | 9.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.46 |
| Juven | Juvenile tuber | 10.57 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.67 | |
| Mother_Juven | Mother tuber of Juvenile | 7.08 |